Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0348
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    29   1.5  
At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    27   6.0  
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    27   6.0  
At5g23510.1 68418.m02758 expressed protein                             26   7.9  
At3g02210.1 68416.m00202 phytochelatin synthetase family protein...    26   7.9  
At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2...    26   7.9  

>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 188 INAIMLVQLFDVP*NSCV*GSLEFPSDLRDLNSQLHDVNEE 66
           ++A+  V+  D P N  V G + F +DLRD   +L   NE+
Sbjct: 12  VSAVAPVRSLDPPLNDDVLGLIVFKADLRDPEQKLASWNED 52


>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 385 IGRIGYRAPPRVFFSVNVK---LPLHHN 311
           +G +G  +  RV+  VNV+   LPLHH+
Sbjct: 47  VGAVGRASSGRVYLGVNVEFPGLPLHHS 74


>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 267 HSETIIINIARPNLKLWCNGSLTLTEKKT 353
           H E ++ N+AR  + +WC   L LT+  T
Sbjct: 618 HRENVVSNLARFVVVVWCFVVLVLTQSYT 646


>At5g23510.1 68418.m02758 expressed protein
          Length = 271

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 258 FVRHSETIIINIARPNLKLWCNGSLTLTEK 347
           FV   E   ++I R    + CN  LT+TEK
Sbjct: 166 FVHIWEAATLSIEREGYTIKCNNDLTITEK 195


>At3g02210.1 68416.m00202 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL3 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623);
           supported by cDNA: gi|26452134|dbj|AK118555.1; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 452

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 55  NNTISSLTSCNCEFRSLKSLGNSSDP 132
           N TI S  +C+C  R+    GN  DP
Sbjct: 239 NKTIVSCPTCSCGCRNTSQPGNCVDP 264


>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
           (GLUR9) plant glutamate receptor family, PMID:11379626
          Length = 947

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 267 HSETIIINIARPNLKLWCNGSLTLTEKKT 353
           H E ++ N+AR  + +WC   L LT+  T
Sbjct: 629 HREKVVSNLARFVVVVWCFVVLVLTQSYT 657


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,827,220
Number of Sequences: 28952
Number of extensions: 136899
Number of successful extensions: 281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)