Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0345
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   1.9  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   4.3  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   10.0 
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   10.0 
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   10.0 

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 559 SQNCQTQASSFQIEDCTEAQKDWD*GTKKVVK 654
           S+NCQ  +    +++C EA  D D G  K ++
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKAIQ 510


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 4   YCGNTFSILCHDATEEATREIRVLRVQTRGKETGN 108
           Y G T     HD+ E+A   ++++  +T+  E+ N
Sbjct: 506 YLGTTIQTSTHDSEEDAVSALQLVFYKTKSNESQN 540


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 581 AWVWQFWLLL 552
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   TIVATLSPSFVTMPPKKQPEK 64
           ++V  LS SF+T+ P ++P+K
Sbjct: 172 SVVPVLSSSFLTVKPAEEPKK 192


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 581 AWVWQFWLLL 552
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,192,968
Number of Sequences: 5004
Number of extensions: 13394
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)