Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0345
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.29 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.29 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.1  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 178 CVSQNTGTCPESSCACPEISCACPETSCACPE 273
           C + N G C       P I+   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 178 CVSQNTGTCPESSCACPEISCACPETSCACPE 273
           C + N G C       P I+   P  SCACP+
Sbjct: 36  CQAVN-GHCSHLCLPAPRINSKSPLLSCACPD 66


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 308  QGLQVWGQRQLLSGQAQLVSGQAQLISGQAQLLSGQ 201
            QG QV   +  +  QAQ  SGQ+++I+   Q    Q
Sbjct: 1153 QGKQVIQTQYQVVSQAQTSSGQSKIIASTQQQQQSQ 1188


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 547 CGNSSQNCQTQASSFQIEDCTEAQKD 624
           C NS +N     S+     C EA KD
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKD 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,648
Number of Sequences: 438
Number of extensions: 904
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)