Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0344
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    32   0.52 
02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018...    29   2.8  
07_01_0114 + 848050-848137,848253-848449                               28   8.4  
01_03_0157 - 13302458-13302593,13303082-13303140,13303984-133041...    28   8.4  
01_01_0657 + 5015435-5016292,5016352-5016657                           28   8.4  

>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +3

Query: 516 LKVANLLDYQHIPLILLC-RICHQNQVPYILRFLVLNLTIF 635
           L ++  L  Q + + + C R  H +Q+P++LRFL+L+ T F
Sbjct: 240 LNLSEQLQEQAVTVAISCIRTVHADQMPHLLRFLLLSATPF 280


>02_02_0501 -
           10999203-10999754,11000724-11001460,11001461-11001836,
           11001917-11001946,11002718-11002912,11003604-11004149
          Length = 811

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 414 TSLFL*PSQPILFPIPKRLTYRTLDRPQLNHHFLLKVANLLD-YQHIPLILLCRI 575
           T+LF  P   +   +PKRLT+ T     +  H LL+  ++ D  +  P+ILLC +
Sbjct: 480 TNLF--PDWSLPLQVPKRLTHGTGRHSVILDHQLLRFIDVYDSIKSPPVILLCSL 532


>07_01_0114 + 848050-848137,848253-848449
          Length = 94

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 682 WMRFVTCCCCVY 647
           W R V+CCCC +
Sbjct: 83  WSRLVSCCCCAF 94


>01_03_0157 -
           13302458-13302593,13303082-13303140,13303984-13304133,
           13304219-13304365,13304535-13304729,13306257-13306451
          Length = 293

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 489 RPQLNHHFLLKVANLLD---YQHIPLILLCRICHQN 587
           +P  +   L KV NL++   Y H+PLI   R+C+ +
Sbjct: 219 QPPESQELLSKVQNLIEKPQYDHLPLIEASRLCNMD 254


>01_01_0657 + 5015435-5016292,5016352-5016657
          Length = 387

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 624 DLTPEILGYTALDFDGKYDKGV*EEYADNPEDWPL*AKSDGSVGADRVSDK*D 466
           DL     G +   FD  YD+ +     D+  DW L   ++GS G    SD  D
Sbjct: 192 DLCGFYAGESRSHFDYFYDEAMAGAAGDHTSDWKLATVAEGSPGGSARSDATD 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,912,069
Number of Sequences: 37544
Number of extensions: 364335
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)