Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0344
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.23 
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              31   0.70 
SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)                   31   0.70 
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_10893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_37417| Best HMM Match : rve (HMM E-Value=0.27)                      29   4.9  
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)                29   4.9  
SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)                       28   6.5  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              28   8.6  
SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)                   28   8.6  

>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = +2

Query: 317 LNTYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVTFATHSIPYSKTSYLSDTRSAP 496
           L TY ++ I   P+  ++ H   + + +T  +   IP + +TH+ PYS   ++ D+ S P
Sbjct: 117 LYTYTYDFIPTTPYSPLHTHDS-IPTPTTPYSPLHIPDSISTHTTPYSPL-HIHDSISTP 174

Query: 497 TEP 505
           T P
Sbjct: 175 TTP 177


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
 Frame = +2

Query: 104 YSSISTPINGKTIINPSTEVRRPINFYKTVAP---APVHETFSDHNNAGNAYFSSLHKQ- 271
           + S+  PIN  +  +PS +  +PIN      P    P++ TF  H +      ++ H Q 
Sbjct: 521 HPSVDQPINANSHCHPSVD--QPINANSHCHPNVDQPINATFHCHPSVDQPINTNSHCQP 578

Query: 272 ------NLDYYNHQNYDTPVYLNTYQH 334
                 N++ +NH + D P+   ++ H
Sbjct: 579 RIDQPINVNSHNHPSVDQPINAKSHYH 605


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
 Frame = +2

Query: 83   PPAASVSYSSISTPINGKTIINPSTE--VRRPINFYKTVAPAPVHETFSDHNNAGNAYFS 256
            PP   V + S+  P+N   + NP  +  V  P+N      P      ++  N   N+ ++
Sbjct: 731  PPGGPVQFGSVYNPVNNDNVYNPVNKGSVYNPVNKGSVYNPFNKDSVYNPVNK--NSVYN 788

Query: 257  SLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFNPHENINVHGPL-VHSV 397
              +K ++  YN  N ++ VY     ++ I +NP     V+ P+ ++SV
Sbjct: 789  PFNKGSV--YNPFNINS-VY--NPVNKDIVYNPFNKDIVYNPVNINSV 831


>SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)
          Length = 639

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 203 PVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYD-TPVYLNTYQHE 337
           P HE   DHN   N + +  + Q LDY    NYD TP +  T  ++
Sbjct: 581 PSHEVKVDHNEEPNHHETLNYDQTLDYDETPNYDVTPSHDKTPNYD 626


>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1240

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 38/155 (24%), Positives = 58/155 (37%)
 Frame = +2

Query: 41   YLAVARASIIDTDYPPAASVSYSSISTPINGKTIINPSTEVRRPINFYKTVAPAPVHETF 220
            Y   A+  + DT   PA +    + + P+  +T  +P T V  P N       A +H T 
Sbjct: 736  YSTPAQTQVTDTYSTPAQTTETQNYNAPV--ETTQSPETTV--PYN-------AEMHTTD 784

Query: 221  SDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFNPHENINVHGPLVHSVS 400
            S      N   S   + N          TP    T  + P    P +    + P V +  
Sbjct: 785  SYQTTEANDRQSQTTEANTPPSQTTEAYTPPAQTTEANTP----PAQTTEANTPPVQTT- 839

Query: 401  TLAAHKSIPVTFATHSIPYSKTSYLSDTRSAPTEP 505
                 +S      T ++PY +TS  S T + PT+P
Sbjct: 840  -----ESYNTPTETTALPYQETSTESSTTAQPTQP 869


>SB_10893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 158 EVRRPINFYKTVAPAPVHETFSDHNNAGNAYFSSLHK 268
           E+ RP+N ++      VH     H+ A  AY  + HK
Sbjct: 160 EIARPVNEFEAEMNPEVHSESKHHHEADKAYQVTFHK 196


>SB_37417| Best HMM Match : rve (HMM E-Value=0.27)
          Length = 354

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 324 HINTNRSDLIHTKISTFTDPWYTLSPH*LHTSLFL*PSQPILF 452
           +I  N  DL        TDPW+T   + +  S F+ P QP+L+
Sbjct: 167 YIAVNEEDLQDKGRRRATDPWWTSKAYPILKS-FMEPGQPVLY 208


>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
          Length = 632

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -1

Query: 347 IRSVRVDMC----SNILEYRSFDGCNNQGFVCGAMKSKHFQHYCGRKTFRV 207
           +R V V  C    S   E+RS + CNN    C + K  ++ HY  +K+ R+
Sbjct: 23  LRVVNVYSCAFYVSPAFEFRSSEFCNNVDLCCQS-KRLNYNHYINKKSKRM 72


>SB_58829| Best HMM Match : HC2 (HMM E-Value=5.8)
          Length = 959

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 60   QVSSILTIHLQH-QCHILQYLRQSMAKLLSTQALKSEDL*IFIKQSHRLLYTKRFPTTIM 236
            Q  + L   L H QCH    L+Q+      T  LK     +   + H +   + FPTT++
Sbjct: 862  QCHTTLLKQLHHNQCHTT-LLKQAHHNQCHTTLLKQ----VHHNKCHTIKMVREFPTTVV 916

Query: 237  LEMLT 251
            ++M+T
Sbjct: 917  MKMMT 921


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 200 APV-HETFSDHNNAGNAYFSSLHKQNLDYYNHQNYD---TPVYLNTYQHEPIGFNPHEN 364
           APV +  F+D ++    YF+S     +  YN   Y    TP+     Q +P+ + P  N
Sbjct: 486 APVMNAPFADMSHPSAPYFNSFQATPMPQYNMYGYGGQITPIPNPMMQQQPLQYGPAPN 544


>SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 653 CLSEVNKYRKI*HQKS*DIRHLILMANTTKEYKRNMLIIQ 534
           C  +V K     HQ    I+H+IL+  TT E + N+L ++
Sbjct: 125 CTYKVKKIALREHQNKHVIKHMILLGRTTGEPQPNLLELE 164


>SB_2009| Best HMM Match : Drf_FH1 (HMM E-Value=0.18)
          Length = 323

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 389 HSVSTLAAHKSIPVTFATHSIPYSKTSYLSDTRSA 493
           HS+  ++A KS+P   ATHS+P    ++ S   SA
Sbjct: 106 HSLPGISATKSLPGISATHSLPGISATHSSPGISA 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,811
Number of Sequences: 59808
Number of extensions: 457872
Number of successful extensions: 1227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)