Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0344
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical pr... 34 0.12
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 31 1.1
Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical pr... 29 3.3
U96695-1|AAB57697.1| 491|Caenorhabditis elegans deoxyuridinetri... 29 3.3
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr... 29 4.3
M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein ( C.ele... 29 4.3
U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 28 5.7
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 7.6
>Z49126-2|CAA88939.2| 411|Caenorhabditis elegans Hypothetical
protein DH11.2 protein.
Length = 411
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 367 QRSRTLGTLCLHTSCTQVYSCDLRNPFYSLFQ 462
Q SR+ GT T C++VY C L +P + L+Q
Sbjct: 49 QVSRSFGTFVHRTLCSKVYYCALHDPVWELYQ 80
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 83 PPAASVSYSSISTPINGKTIINPSTEVRRPINFYKTVAPAPVHETFSDHNNAGNAYFSSL 262
PP +S++ SIS+ G +I PST + T P+ + + NA SSL
Sbjct: 200 PPLSSIT--SISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPPNASSSSL 257
Query: 263 HK-QNLDYYNHQNYDTPVYLNTYQ 331
K Q+ D Q D V N Q
Sbjct: 258 IKRQSQDVQEQQRVDFEVARNVSQ 281
>Z81097-1|CAB03175.1| 491|Caenorhabditis elegans Hypothetical
protein K07A1.2 protein.
Length = 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 101 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 199
S + P NGK ++ ++ PI +Y VAP
Sbjct: 57 SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89
>U96695-1|AAB57697.1| 491|Caenorhabditis elegans
deoxyuridinetriphosphatase protein.
Length = 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 101 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 199
S + P NGK ++ ++ PI +Y VAP
Sbjct: 57 SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89
>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
protein M79.1c protein.
Length = 1209
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 504 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 680
H FL + A + D H L+ L +C YI+ + N + +LR T + + +I
Sbjct: 335 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 393
>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
protein M79.1b protein.
Length = 1214
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 504 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 680
H FL + A + D H L+ L +C YI+ + N + +LR T + + +I
Sbjct: 340 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 398
>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
protein M79.1a protein.
Length = 1224
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 504 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 680
H FL + A + D H L+ L +C YI+ + N + +LR T + + +I
Sbjct: 350 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 408
>M13235-1|AAA28129.1| 552|Caenorhabditis elegans protein (
C.elegans DNA homologousto the v-abl oncogene. ).
Length = 552
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 504 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 680
H FL + A + D H L+ L +C YI+ + N + +LR T + + +I
Sbjct: 201 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 259
>U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical
protein R11G1.6c protein.
Length = 811
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 323 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 433
T PI ++PH+N + H P+V S +T K++ T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 323 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 433
T PI ++PH+N + H P+V S +T K++ T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 323 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 433
T PI ++PH+N + H P+V S +T K++ T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 323 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 433
T PI ++PH+N + H P+V S +T K++ T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591
>Z73971-8|CAA98250.1| 488|Caenorhabditis elegans Hypothetical
protein C50H2.2b protein.
Length = 488
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/51 (19%), Positives = 28/51 (54%)
Frame = +2
Query: 200 APVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFN 352
+P+H S H+ +++ +++HK N+D ++ + + + L+ + + N
Sbjct: 8 SPLHIDLSQHHPDNHSHRNNIHKPNMDNLDNSDVENALILDNLDNHHMTSN 58
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 618 TPEILGYTALDFDGKYDKGV*EEYADNPED 529
T EILG L DG+ +KG+ +EY D+P +
Sbjct: 552 TDEILG--KLTPDGRREKGLIDEYLDDPSE 579
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,162
Number of Sequences: 27780
Number of extensions: 349666
Number of successful extensions: 1081
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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