Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0344
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23650.1 68418.m02773 myb family transcription factor contain...    34   0.11 
At3g05210.1 68416.m00568 nucleotide repair protein, putative sim...    30   1.3  
At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmoti...    29   2.3  
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu...    29   3.0  
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu...    29   4.0  
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    29   4.0  

>At5g23650.1 68418.m02773 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 337

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 34/131 (25%), Positives = 47/131 (35%)
 Frame = +2

Query: 77  DYPPAASVSYSSISTPINGKTIINPSTEVRRPINFYKTVAPAPVHETFSDHNNAGNAYFS 256
           D   A + S S+   PI  + I N             T+ P+     +  HNN  NA  +
Sbjct: 183 DITIAENKSISTKQRPITWQKINNNGATASNTQANQTTLQPSLDIPIYGTHNNIWNAQAT 242

Query: 257 SLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVTF 436
            +  Q     NH  YD P+  NT     +   P  NI ++G    S   +    S   T 
Sbjct: 243 QVISQPSQ--NHPTYDAPIIWNT----QVASQPSANIPMYGTSTISQPMVGPMLSPFGTN 296

Query: 437 ATHSIPYSKTS 469
             H  P   TS
Sbjct: 297 LNHLAPSHMTS 307


>At3g05210.1 68416.m00568 nucleotide repair protein, putative
           similar to nucleotide repair protein [Lilium
           longiflorum] GI:3297891, SP|P07992 DNA excision repair
           protein ERCC-1 {Homo sapiens}; contains Pfam profile
           PF00633: Helix-hairpin-helix motif
          Length = 410

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 617 VKSYDIYSPPINTAAASYESHPSLKNTLTYS 709
           VKS D+YSPP  ++AA+  S PS  + + +S
Sbjct: 63  VKSSDVYSPPPPSSAAASSSQPSGASQVPHS 93


>At3g30775.1 68416.m03933 proline oxidase, mitochondrial / osmotic
           stress-responsive proline dehydrogenase (POX) (PRO1)
           (ERD5) nearly identical to SP|P92983 Proline oxidase,
           mitochondrial precursor (EC 1.5.3.-) (Osmotic stress-
           induced proline dehydrogenase) [Arabidopsis thaliana];
           identical to cDNA proline oxidase precursor GI:1817543
          Length = 499

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 332 VDMCSNILEYRSFDGCNNQGFVCGAMKSKHFQHYC-GRKTFRVQEPVRLFYK 180
           VD+ + ++  +  D    +G V G +KS  + H+C G       E VR  Y+
Sbjct: 96  VDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVYE 147


>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
            putative similar to mdr-like P-glycoprotein atpgp1
            GI:3849833 from [Arabidopsis thaliana]
          Length = 1245

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = +1

Query: 376  RTLGTLCLHTSCTQVYSCDLRNPFYSLFQNVLLIGHSIGPN*TITFCSKWPIFWIISIFL 555
            RT+         ++ ++C+L  P  + F    + G   G +  + FCS     W +S+ +
Sbjct: 874  RTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLAFCSYALGLWYVSVLI 933

Query: 556  LYSFVVFAIKIK 591
             +    F   IK
Sbjct: 934  NHKETNFGDSIK 945


>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
            putative similar to mdr-like P-glycoprotein GI:3849833
            from [Arabidopsis thaliana]
          Length = 1247

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 376  RTLGTLCLHTSCTQVYSCDLRNPFYSLFQNVLLIGHSIGPN*TITFCSKWPIFWIISIFL 555
            RT+         ++ ++C+L  P  S      + G   G +  + FCS     W IS+ +
Sbjct: 876  RTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLAFCSYALGLWYISVLI 935

Query: 556  LYSFVVFAIKIK 591
              +   F   IK
Sbjct: 936  KRNETNFEDSIK 947


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 510 FLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLIHLL 689
           F+ +V  L    H  ++ L   C + +VP ++   + N T+F HL  +         H L
Sbjct: 450 FINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHLHGSMIDSSLTWEHRL 509

Query: 690 KI 695
           KI
Sbjct: 510 KI 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,132
Number of Sequences: 28952
Number of extensions: 308981
Number of successful extensions: 850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)