Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0343
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   4.0  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.0  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   9.1  
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    25   9.1  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -1

Query: 486 SPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRRPDN 307
           S + Y   L +  S  E E+        F       SR +++LLPR +P+     R+P  
Sbjct: 47  SQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQP-- 104

Query: 306 IEQNPHVP 283
              NP +P
Sbjct: 105 ---NPSIP 109


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 489 PSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 376
           PSP++  +   ++ + EE  D S   SS FT+S+ PS+
Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 236 IKISRVSAQMQGSRRLGTCGFCSML-SGLLRRAVCIGS 346
           IK   +   +QG  +L   GFC+ + S + +R   +G+
Sbjct: 506 IKSDNILLSLQGDIKLTDFGFCAQIDSNMTKRTTMVGT 543


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 627 SSDVLCVFRFLFTLKGQAAAPGLSLSECRSSALSPLVGPY 508
           S  + CV +F+ T+  + A     L    S   SP+V PY
Sbjct: 60  SGFISCVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,342
Number of Sequences: 5004
Number of extensions: 54386
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)