Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0343
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 28   7.3  
SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)                     27   9.7  
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    27   9.7  
SB_710| Best HMM Match : rve (HMM E-Value=0.003)                       27   9.7  

>SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 354 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIP 181
           PR D   T+  R    ++  P +P++  PC  A     L K+      LSVGL +PIP
Sbjct: 30  PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 540 SSALSPLVGPYFFETGSPSPLRYESGLMLA-ASSEEFEDKSDDRSSIFTVSWLPSSR*KD 364
           S + SP+  P+     SP P    S       SS    D S + SS  ++S+ PSS    
Sbjct: 532 SISTSPISNPHPSSNPSPHPSSNPSSEPSPNPSSNPSSDPSPNPSSDPSLSFSPSSSSSP 591

Query: 363 SLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCI 262
           S+ P  + +    R    N  +NP+  +   P +
Sbjct: 592 SVRPSPNLISNPNRNSNSNSNRNPNPSSNPSPSL 625


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 503 SKRAHLLHCGTSPG*CWQRRLKNSKINRTIVLR--FSLCLGCPARGR 369
           S    +L C T+P   W+ RL   K  R I+    F++ +G    G+
Sbjct: 561 SDNCKILKCSTNPPILWKSRLSRQKKTRRIIAHVFFAVMIGATQLGQ 607


>SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)
          Length = 197

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -1

Query: 390 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPC---ICADTRDILIKTKNS 220
           WL     K + L  RD    A R R +++EQ   +     P     C  +R  LI   NS
Sbjct: 12  WLHREDIKPTPLKYRDVWKHALRSRVESVEQRKGLRQANSPAYRHTCCLSRAHLIPIPNS 71

Query: 219 EIYLSV 202
            +Y+ +
Sbjct: 72  IVYIGI 77


>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 181  RYGPVQSNREINLGVFSFY*NIPCICANARIT*IRNMRVLFDVIRSPPARGMHRI 345
            +Y P+ +NR+I L   S+  NI   C  +  T + N+ V+  + ++PP      I
Sbjct: 1308 KYMPL-NNRKIKLAYTSYVVNIVLNCLFSPPTILLNIMVILAIYQTPPLHSASNI 1361


>SB_710| Best HMM Match : rve (HMM E-Value=0.003)
          Length = 538

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 561 LSLSECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFED 427
           +S   C+S ++   +   F E G P+ +R +SG     +SEEF+D
Sbjct: 1   MSQVNCKSKSVIDAMKQVFAEHGIPAVVRSDSGSQY--TSEEFDD 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,045,437
Number of Sequences: 59808
Number of extensions: 414088
Number of successful extensions: 1066
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)