Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0343
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48340.1 68418.m05973 expressed protein                             31   0.64 
At2g35880.1 68415.m04405 expressed protein                             30   1.5  
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    29   2.6  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    29   2.6  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    29   3.4  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    29   3.4  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    28   6.0  
At3g46220.1 68416.m05003 expressed protein                             27   7.9  
At3g44720.1 68416.m04813 prephenate dehydratase family protein s...    27   7.9  

>At5g48340.1 68418.m05973 expressed protein
          Length = 510

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 577 GCCSWAIPVRVPIFCSFPSRWAILFR-NGLTF 485
           G  SW I  R+   C  P  W +LFR NG+ F
Sbjct: 373 GLLSWTIHFRLSEECQTPDSWELLFRENGIEF 404


>At2g35880.1 68415.m04405 expressed protein
          Length = 432

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 441 QTTLPTSARTRTAMEKVSPFRKSMAQREGKEQKIGTLTGIAQEQQP 578
           Q  L T  ++  A EK    +K  A++ G+E+K   +    +EQ+P
Sbjct: 367 QPKLETQEKSVKAKEKKKKVKKEEAEKRGEEEKATAVAAKPEEQKP 412


>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 632 VLLPMCFAFFVFYLLSKDRLLLLGYPCQSADLLL 531
           VLL   F F+VF ++ K+ L L G+P +S ++ L
Sbjct: 17  VLLRFDFNFWVFVVIEKENLCLYGHPNESWEVNL 50


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -1

Query: 549 ECRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFE---DKSDDRSSIFTVSWLPS 379
           +C S AL+P V        + +P++ + GL    SS       D SDDR  +     +P 
Sbjct: 523 QCSSGALNPAVDT---SDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEKKGIPD 579

Query: 378 SR*KDSLLPRRDPMHTARRRRPD 310
                +L+P  D      RR P+
Sbjct: 580 QHSCGALIPAVDISDVFARRSPE 602


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 390 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL 277
           WL  +R K+SLL +RD      R  P    QN H P++
Sbjct: 259 WLQVARAKNSLLVQRDNAELRYRYHPFRGHQNIHHPSM 296


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 515 GHTFSKRAHLLHCGTSPG*CWQ 450
           G+T  K +  LHCG + G CW+
Sbjct: 456 GYTHCKASGALHCGINNGGCWR 477


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 507 SMAQREGKEQKIGTLTGIAQEQQPVL*E*IKNEKRKAHRK 626
           ++AQ  G E K+GT   + +EQ+P +     N KR+  R+
Sbjct: 213 NVAQSTGDEVKVGTSINLEKEQEPKVPVTSTNLKREQDRR 252


>At3g46220.1 68416.m05003 expressed protein
          Length = 530

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 546 CRSSALSPLVGPYFFETGSPSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 376
           CRS     L   Y +  G+P    +    M+       ED  +  S I ++S LPSS
Sbjct: 4   CRSLGFLKLCSSYRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQNSWIDSLSVLPSS 60


>At3g44720.1 68416.m04813 prephenate dehydratase family protein
           similar to bacterial PheA gene products
          Length = 424

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 589 SQRTGCCSWAIPVRVPIFCSFPSRWAILFRNGLTFS 482
           + R  C S AIP RV + C + S  +  F NG++ S
Sbjct: 17  TSRNKCFSHAIPKRVAVTCGYRSE-SFSFPNGVSVS 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,088
Number of Sequences: 28952
Number of extensions: 285895
Number of successful extensions: 743
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)