Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    31   0.19 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   1.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   5.4  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.1  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 626 NVAEEWLR--SRPQQGQNRRHDSH---RCGRDSQLPPEHIHLRQQRPQGGEEKE 480
           NVAE  L   S P+  +N +  S    + GRD +  P  +H   +RP+ GE+ E
Sbjct: 696 NVAETILEVTSSPKSSENSQKQSEITKKRGRDEEDEPSDLHSSPKRPKTGEDGE 749


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 497 GGEEKEEMRLYRQQAFVNLHFMQISLSDGVF 405
           GGE K+   L+  +AFV LH   I+ ++GVF
Sbjct: 650 GGEGKQGTILHIYRAFVFLHNRDIAENNGVF 680


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = -2

Query: 617 EEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQAFVNLH 438
           E+ LR + +    +  +  +  ++     E    +++R Q   EKEE +  RQ+  +N  
Sbjct: 110 EKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQILNKE 169

Query: 437 FMQISLSD 414
             Q+ L++
Sbjct: 170 RQQLKLNN 177


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 39  IFIFQMLLLLINKSENPRL 95
           I + + +L LINK ENP+L
Sbjct: 331 IHLLESMLKLINKKENPKL 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,239
Number of Sequences: 5004
Number of extensions: 47049
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)