Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0437 - 9399982-9401253                                           31   0.79 
04_04_1559 - 34428286-34429062                                         30   1.8  
08_02_0641 + 19639211-19639366,19640376-19640882                       28   5.6  
01_01_1137 + 9017211-9018584                                           28   5.6  
06_03_0685 - 23499779-23500204                                         28   7.4  
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390           28   7.4  
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    28   7.4  
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30...    27   9.7  

>09_02_0437 - 9399982-9401253
          Length = 423

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 613 SGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFIC 515
           S ++VA SRG + +   +AAG  P C P   +C
Sbjct: 112 SSWSVADSRGSLVLLRSLAAGHAPFCFPEVVVC 144


>04_04_1559 - 34428286-34429062
          Length = 258

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -2

Query: 593 QQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 453
           ++G  RR +S   GRD ++   H H R+ R   G   + ++  R +A
Sbjct: 110 ERGAERRRESCERGRDRRIRTSHHHPRRIRATVGRRDDRIQARRSEA 156


>08_02_0641 + 19639211-19639366,19640376-19640882
          Length = 220

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 531 GRQLGVTPAAMGIVTAILPLLWATAKPLFGY 623
           G +LGV+P A+G +T    ++ A + PL  Y
Sbjct: 133 GAELGVSPTALGSLTLCRAIVQAASYPLAAY 163


>01_01_1137 + 9017211-9018584
          Length = 457

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 604 AVAHSRGRIAVTIPIAAGVTPSCRPNTFICGNSGPRAAKKKKKCAFTGSKLLLI 443
           A  HS  R+ VT   +A   P  RP        GP  A   +  A  G++  L+
Sbjct: 8   AACHSPARLVVTCSSSATPAPPRRPLRVAVVGGGPAGASAAEALASAGAQAFLL 61


>06_03_0685 - 23499779-23500204
          Length = 141

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 623 VAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGG 492
           VA E +R RP +G   R    R GR   LPP    + ++ P+GG
Sbjct: 33  VAVERIRLRPPRGGRIRRWPPRRGRIRGLPPLGGRICRRPPRGG 76


>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
          Length = 519

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 529 SGGNWESRPQ-RWES*RRF-CPCCG 597
           SGGNW +RP   WE  RR  C  CG
Sbjct: 320 SGGNWFNRPNYLWEGGRRVGCVKCG 344


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 96  ITHHNFITLNHVLIEMLDCSVKNTLHNRAATLFLSQHSLM 215
           I  H  ITL   +IE ++ SV+   H      F+ QH+L+
Sbjct: 188 IYDHPSITLKDPIIEQINHSVQKLTHATNLLQFIGQHALI 227


>01_01_0039 +
           302332-302471,302981-303509,304345-304389,304572-304718,
           304834-304899,304993-305058,305171-305257
          Length = 359

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 617 EEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHL 516
           EE LR RP Q       S  C   + LPP H+HL
Sbjct: 125 EEELRPRPDQSLISNPRS--CSATTLLPPPHLHL 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,631
Number of Sequences: 37544
Number of extensions: 307668
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)