Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 29   3.3  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   5.7  
SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)                  28   7.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                27   9.9  
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +3

Query: 519 MNVFGRQLGVTPAAMGIVTAILPLLWATAKPLFGYVVDYWPA 644
           M+++ RQ+G+  + +G++  I PL+   + P +  + D + A
Sbjct: 111 MSLYFRQIGLNASLVGLLAGIRPLIQFASAPFWSVISDKFKA 152


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 629  YNVAEEWLRSRPQ-QGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGG 492
            Y+  +  LR   + Q  NRR D  R G D    P H+   Q R +GG
Sbjct: 972  YHTTDNKLRLLERAQAANRRRDQ-RTGTDDTSAPTHVQDLQAREEGG 1017


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 503 PQGGEEKEEMRLYRQQAFVNLHFMQISLSDGVFMKLILKLVFIF 372
           P  GEE EE R+YRQ     L     ++++ VF  L +  +F+F
Sbjct: 444 PPKGEELEEARMYRQNVLETLK----AVTEIVFYLLFVICLFVF 483


>SB_38828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 611 WLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHL 516
           WL SRP +G  +  D H  G  ++ PP+ + L
Sbjct: 15  WLVSRPTEGTMKYSDRHLAGLSAR-PPDRVEL 45


>SB_11388| Best HMM Match : MFS_1 (HMM E-Value=0.0022)
          Length = 720

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 519 MNVFGRQLGVTPAAMGIVTAILPLLWATAKPLFGYVVD 632
           +N + RQ+G++   M I++ + PL+     PL+G + D
Sbjct: 65  LNGYIRQIGISNDQMQILSGVRPLIHLVFAPLWGVLGD 102


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 496  PWGRCCRK*MCSGGNWESRP 555
            P G C     CSGG+WE +P
Sbjct: 1191 PEGLCAPGWYCSGGSWERKP 1210


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 626  NVAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPE-HIHLRQQRPQGGEEKEEMRLYRQQ 456
            +V E   R   +    R+H + + GRD Q+  E  +  +QQ  + G ++E+     QQ
Sbjct: 1693 DVRERMKRRVEEIRAQRQHVAEQKGRDQQIEKEGKVREQQQLQEEGRQREQQNEQEQQ 1750


>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 578 RRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRL 468
           RR   H    D ++ PE+  + + RP G +E   +RL
Sbjct: 581 RRQWCHNIEHDGEIRPENRSMERLRPYGSQETVAVRL 617


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,640,539
Number of Sequences: 59808
Number of extensions: 356412
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)