Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    28   0.22 
AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled ...    24   3.6  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 617 EEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEE 477
           ++W + + QQ Q R+   HR     QL P     +QQ+ Q  +++++
Sbjct: 367 QQWQQQQQQQQQPRQSLPHRKQTQLQLSPRLQQQQQQQQQSQQQQQQ 413



 Score = 26.6 bits (56), Expect = 0.68
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 605 RSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQ 456
           + RP+Q Q ++    +   +  +PP+   LRQQR Q   ++++ +  +Q+
Sbjct: 276 QQRPRQQQQQQQQQQQQQGERYVPPQ---LRQQRQQQQHQQQQQQQQQQR 322


>AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled
           receptor 3 protein.
          Length = 605

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +3

Query: 516 QMNVFGRQLGVTPAAMGIVTAILPLLW 596
           +MN F +QL +    +G++  +  ++W
Sbjct: 260 RMNFFIKQLAIADLCVGLLNVLTDIIW 286


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,126
Number of Sequences: 2352
Number of extensions: 12128
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)