Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    31   0.70 
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   8.7  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        27   8.7  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 617 EEWLRSRPQQGQNRRHDSH 561
           EEW RSRP++GQ R++D +
Sbjct: 328 EEWKRSRPKRGQYRKYDKN 346


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 617 EEWLRSRPQQGQNRRHDSH 561
           EEW RSRP++GQ R++D +
Sbjct: 328 EEWKRSRPKRGQYRKYDKN 346


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 620 AEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEK--EEMRLYRQQ 456
           A+  L   PQ  +  R D H   ++  L     H++Q   +  EEK  EE RL RQQ
Sbjct: 388 AQRILYENPQFAE--RKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQ 442


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 560 RCGRDSQLPPEHIHLRQQRPQGGEEKE 480
           R G D +  P+H  LR +R +GG+ +E
Sbjct: 92  RAGSDDEAMPKHTILRYRRKKGGQWRE 118


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -3

Query: 589 RGRIAVTIPIAAGVTPSCRP---NTFICGNSGPRAAKKKKKCAFTG 461
           RGR    +P   G  P+C P   N   C N G      K+ C   G
Sbjct: 499 RGRCGRDVPPLEGEAPTCNPDDANAHCCSNGG-YCGNSKEHCECNG 543


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 581  NRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQ 459
            NR HD  R   D   PP  + +  + PQ   ++E MR + +
Sbjct: 888  NRGHDQDRSFLDHYYPPMVVVVETESPQIVRDQEMMRQFEE 928


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 581  NRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQ 459
            NR HD  R   D   PP  + +  + PQ   ++E MR + +
Sbjct: 887  NRGHDQDRSFLDHYYPPMVVVVETESPQIVRDQEMMRQFEE 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,958,300
Number of Sequences: 27780
Number of extensions: 279386
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)