Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0342
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    28   6.1  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    28   6.1  
At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / AC...    28   6.1  
At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / AC...    28   6.1  
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s...    28   6.1  

>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1115

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 557 CGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 453
           C  D +   EH+ +R ++ Q  EEKE+ R Y+ QA
Sbjct: 531 CNVDEKDIAEHLRVRLKKEQ--EEKEDKRRYKAQA 563


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1116

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 557 CGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 453
           C  D +   EH+ +R ++ Q  EEKE+ R Y+ QA
Sbjct: 532 CNVDEKDIAEHLRVRLKKEQ--EEKEDKRRYKAQA 564


>At4g24230.2 68417.m03478 acyl-CoA binding protein, putative / ACBP,
           putative contains similarity to acyl-CoA binding protein
           2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 362

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 629 YNVAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEM 474
           Y +AEE +  R   GQ+ + DS      S + PE++   + + QG EE  E+
Sbjct: 120 YVIAEEVILVR---GQDEQSDSAEAESISSVSPENVVAEEIKSQGQEEVTEL 168


>At4g24230.1 68417.m03477 acyl-CoA binding protein, putative / ACBP,
           putative contains similarity to acyl-CoA binding protein
           2 [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 364

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 629 YNVAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEM 474
           Y +AEE +  R   GQ+ + DS      S + PE++   + + QG EE  E+
Sbjct: 120 YVIAEEVILVR---GQDEQSDSAEAESISSVSPENVVAEEIKSQGQEEVTEL 168


>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
           strong similarity to ubiquitin-specific protease 12
           (UBP12) [Arabidopsis thaliana] GI:11993471; contains
           Pfam profiles PF00443: Ubiquitin carboxyl-terminal
           hydrolase, PF00917: MATH domain
          Length = 1115

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 557 CGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 453
           C  D +   EH+ +R ++ Q  EEKE+ R Y+ QA
Sbjct: 530 CNVDEKDIAEHLRVRLKKEQ--EEKEDKRKYKAQA 562


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,874,928
Number of Sequences: 28952
Number of extensions: 246356
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)