Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0340
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 31 0.52
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 3.7
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 4.8
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 4.8
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 4.8
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p... 27 6.4
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p... 27 6.4
Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical p... 27 6.4
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p... 27 6.4
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical pr... 27 6.4
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote... 27 6.4
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 27 8.4
AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical ... 27 8.4
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 27 8.4
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 8.4
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 8.4
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 8.4
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical protein
T12G3.2b protein.
Length = 912
Score = 31.1 bits (67), Expect = 0.39
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = -2
Query: 452 APAASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
APA A PT P L RS +LP S T + +S SP +P + + + +
Sbjct: 834 APAPIARNMGPTMISPPPAKLVRSDSDHLPPSNTMMRVS---CSPPKPPSQLPSPNQ--- 887
Query: 272 TYIPHLNFQGPQRVSGHRRK 213
T IPH+ G + H ++
Sbjct: 888 TTIPHMYNNGIPMIYEHHQQ 907
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 0.52
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 437 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 285
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 0.52
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 437 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 285
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 425 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 318
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 247 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 119
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 231 IRTPPQMRCSSRSEPYLPSIGFHGT 157
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 4.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 207 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 34
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1216 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1264
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 195 SEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIE 43
S+ LP+ GF T K +P+ S A +G RT F EGT E
Sbjct: 1205 SKSKLPTFGFFSKTTKTTKTTGYPETSEAYTGELDTTDRTHDF--EGTSFE 1253
>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z50109-11|CAD91624.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 570 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 629
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 630 SYSPHLS 636
>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
protein F45E10.1b protein.
Length = 1549
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
protein F45E10.1a protein.
Length = 1583
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z47810-3|CAD91632.1| 1520|Caenorhabditis elegans Hypothetical
protein F45E10.1d protein.
Length = 1520
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 570 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 629
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 630 SYSPHLS 636
>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
protein F45E10.1c protein.
Length = 1654
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>Z47810-1|CAD91631.1| 1234|Caenorhabditis elegans Hypothetical
protein F45E10.1e protein.
Length = 1234
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 284 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 343
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 344 SYSPHLS 350
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 252 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 151
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
UNC-53 protein.
Length = 1583
Score = 27.1 bits (57), Expect = 6.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 449 PAASASRPN-PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNRRDIS 273
P +S+S+P P+R S R+ N+ L+ S RG++ S
Sbjct: 704 PTSSSSKPRVPSRSSTSVDSRSRAEQENVYKLLSQCRTSQRGAAATSTFGQHSLRSPGYS 763
Query: 272 TYIPHLN 252
+Y PHL+
Sbjct: 764 SYSPHLS 770
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 8 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 124
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 355 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 395
>AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical
protein Y79H2A.1b protein.
Length = 466
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 8 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 124
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 306 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 346
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 8 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 124
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 392 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 432
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 227 RILSADLENSGEGCTWRCRAGSYPYPQQVS 316
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 227 RILSADLENSGEGCTWRCRAGSYPYPQQVS 316
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 8.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 227 RILSADLENSGEGCTWRCRAGSYPYPQQVS 316
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 26.6 bits (56), Expect = 8.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 8 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPKWPEDAAERS 124
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 419 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,888
Number of Sequences: 27780
Number of extensions: 262252
Number of successful extensions: 1030
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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