Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0340
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07220.1 68414.m00768 expressed protein 40 6e-04
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 1.9
At5g42370.1 68418.m05159 expressed protein 29 1.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 1.9
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 1.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.6
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 28 3.4
At5g22390.1 68418.m02612 expressed protein 27 4.5
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 4.5
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 27 5.9
At2g05210.1 68415.m00549 expressed protein 27 5.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 5.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 27 7.8
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 7.8
At1g76965.1 68414.m08961 glycine-rich protein 27 7.8
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 7.8
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 40.3 bits (90), Expect = 6e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 444 RIRFPSKPDTPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHV 268
R+R P K +PRS +L+ L + F F L Y +D + +T G+ EP H+
Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HI 63
Query: 267 HPSPEFSRSAESIRTPPQMRCSSRSEPY 184
P FS + + + ++CS S PY
Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 242 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 108
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 181 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 71
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 44 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 175
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 212 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 313
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 237 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 139
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 27.9 bits (59), Expect = 3.4
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Frame = -1
Query: 303 GYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRS-EPYLPSI--GFHGTRTLRQKRK 133
G+G P++ PSP F +++ + P S+ P P+I GT T
Sbjct: 410 GFGISPSQPNPFSPSPAFGQTSANPTNPFSSSTSTNPFAPQTPTIASSSFGTATSNFGSS 469
Query: 132 LFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLP--GSGIGTGF 4
F S+++ G T VF T P P GS GF
Sbjct: 470 PFGVTSSSNLFGSGSSTTTSVFGSSSAFGTTTPSPLFGSSSTPGF 514
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 116 ERSGKSFLFCLSVRVPWNPIEG 181
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 279 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 190
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 208 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 29
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 28 GFRNRNRI 5
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 237 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 82
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 164 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 45
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 164 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 45
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 243 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 94
S S PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 198 RSEPYLPSIGFHGTRTLRQKRK 133
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 453 GTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 361
G + FP KP+ P P +P+L + F D
Sbjct: 94 GAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 344 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 216
I TR P G++RRD+ST PH +GH +
Sbjct: 15 IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,323,212
Number of Sequences: 28952
Number of extensions: 254449
Number of successful extensions: 826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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