Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0338
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.9  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   3.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.6  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 TTYKITHLNKMYESTRKCRIY 147
           T +  TH N+MY S ++  IY
Sbjct: 35  TEHNYTHNNEMYHSVKEEPIY 55


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 182 YLSE*SCKL*RELGIVDSFRTVDKNVKLMCIC 277
           Y  + +CK+ RE+ +    ++ D+ V+   IC
Sbjct: 72  YTEKGTCKMGREIEVGYDLKSPDRFVRQFTIC 103


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 391 APGTMAPTITKLATSW 344
           APG + P +T    SW
Sbjct: 416 APGLVGPLLTSALASW 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,056
Number of Sequences: 336
Number of extensions: 3602
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)