Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0338
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020...    30   1.8  
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357...    28   7.4  

>02_05_1217 +
           34999631-34999945,35000670-35000835,35001908-35002005,
           35002245-35002319,35002413-35002481,35002552-35002637,
           35002710-35002827,35003575-35003902,35003995-35005682,
           35005822-35005881,35005953-35006027,35006105-35006197,
           35006298-35006372,35006464-35006532,35006614-35006682,
           35006994-35007113
          Length = 1167

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 197 SCKL*RELGIVDSFRTVDKNVKLMCICCEYYVLM 298
           +CK+ R L  +  F   DK+  L   CCEY +LM
Sbjct: 245 NCKVARILPKIIEFAKNDKSAVLRARCCEYAILM 278


>10_01_0326 +
           3574129-3574329,3575144-3575692,3575914-3576072,
           3576349-3577543,3577626-3577762,3578052-3578242,
           3578888-3579218
          Length = 920

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 453 VNPVLTQQSHHFSNTEVNIQMR 388
           V+PV+   SHH SN + ++Q+R
Sbjct: 778 VSPVVVGPSHHTSNIDASVQLR 799


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,154
Number of Sequences: 37544
Number of extensions: 317355
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)