Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0338
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical...    29   3.8  
AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical...    28   5.0  
AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine re...    27   8.7  

>AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y37E3.19 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 138 IVLINTTFSCGFVHFI*VSNLVS-CSENWASSIL 236
           ++ +NT FSC F HFI  + L++ C++  A S +
Sbjct: 4   LISMNTLFSCIFTHFIIGATLIAFCTKQKAKSTI 37


>AF024501-11|AAB70366.2|  443|Caenorhabditis elegans Hypothetical
           protein F39E9.1 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 256 IFIHRPKRIDDAQFSLQLTRLLT*IKCTNPQENVVFINT 140
           +++   K+ DD  FS+ + R    +  T P   VV +NT
Sbjct: 209 LYLTTKKQTDDPAFSVYVIRQAQTVSTTQPNSTVVILNT 247


>AF101305-4|AAR85910.1|  342|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 2 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 185 LSE*SCKL*RELGIVDSFRTVDKNVKLMCICCEYYVL--MWL 304
           L+E  C++  E+      RTV      +CICC  + L   WL
Sbjct: 3   LNETDCQIMAEIATSSFLRTVLSTTTFLCICCIPFCLNFAWL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,934,472
Number of Sequences: 27780
Number of extensions: 312726
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)