Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0338
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family...    32   0.38 
At5g38310.1 68418.m04624 hypothetical protein                          29   3.5  
At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containi...    29   3.5  
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide...    28   6.1  
At1g18850.1 68414.m02347 expressed protein                             28   6.1  
At4g25640.1 68417.m03692 MATE efflux family protein similar to r...    27   8.1  
At4g16095.1 68417.m02440 disease resistance protein-related cont...    27   8.1  

>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
           protein 
          Length = 846

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 345 GSSQFLIQSELSTFNHIST*YSQQIHISFTFLSTVLKESTMPSSRYNLQDY 193
           GS + + + E+S ++HI    SQ I +    L  +  ++   S+ +NL+DY
Sbjct: 604 GSYEDMFRKEISKYDHICEDISQNIEVQEQLLMQIQAQNEEFSTIFNLEDY 654


>At5g38310.1 68418.m04624 hypothetical protein 
          Length = 188

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = -2

Query: 351 LHGSSQF---LIQSELSTFNHIST*YSQQIHISFTFLSTVLKESTMPSSRYNLQDYSLK* 181
           L+ S +F   L Q+    F+H    +S   ++S T   T+ K++ + S R NLQ  + K 
Sbjct: 33  LNSSPEFDFCLRQNSKQRFSHADELFSYWKNLSHTATDTISKKTEITSPRSNLQTLAAKS 92

Query: 180 NVR 172
           + R
Sbjct: 93  DTR 95


>At3g04130.1 68416.m00437 pentatricopeptide (PPR) repeat-containing
           protein
          Length = 508

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -1

Query: 316 VIYLQPHQHVVFTTNTH*FHIFIH---RPKRIDDAQFSLQ 206
           V+ LQ   H+  T N H F+IFIH   +  R+++A +++Q
Sbjct: 211 VVLLQLKSHI--TPNAHTFNIFIHGWCKANRVEEALWTIQ 248


>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
           identical to SP|P11139 Tubulin alpha-1 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
 Frame = -3

Query: 443 YSPNNRITSATLR*TFKCARHDGTNNNKISHF---MVP-ASS*FNL-SYLPSTTSARSIH 279
           YS  NR+ S T+       R DG  N  I+ F   +VP     F L SY P  +SA++ H
Sbjct: 224 YSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYH 283

Query: 278 NKYT---LVSHFYPPS*KNRRC 222
            +++   + +  + PS    +C
Sbjct: 284 EQFSVPEITTSVFEPSNMMAKC 305


>At1g18850.1 68414.m02347 expressed protein
          Length = 399

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 536 IKEMTDAGAVMLISILEYF 592
           IKE +D GA  L+SIL+YF
Sbjct: 190 IKEASDLGATELLSILKYF 208


>At4g25640.1 68417.m03692 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 488

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
 Frame = +1

Query: 352 WLILLLLVPSCLAHLNVYLSVAEVMRLLGEYRIYSI*NYIDQILAIP*CVSLSCRYRPIS 531
           W+IL +   SC   L +Y+    V+RLLG+    ++      +L IP   SL+  + P S
Sbjct: 120 WIILFV---SCFFLLPIYIFATPVLRLLGQAEEIAVPAGQFTLLTIPQLFSLAFNF-PTS 175

Query: 532 Q--DKRND*RGRCYVNFYIGIFLHLIVL 609
           +    ++      ++ F + + LH+I+L
Sbjct: 176 KFLQAQSKVVAIAWIGF-VALSLHVIML 202


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 399 CLPQCC*SDAIVG*VQDLLHLKLYRSNFG 485
           CL  CC  D  +  ++ LLHLKL   ++G
Sbjct: 104 CLRYCCMEDDPMPILEKLLHLKLVELSYG 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,327
Number of Sequences: 28952
Number of extensions: 271684
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)