Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0337
         (335 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.37 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   1.5  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   8.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   8.0  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 197 NSKGYRRGHQGLVRSQVPHT-WNYSALHVHESVQSW 301
           N  G+   H  L +   PH  W Y  L+V++ +Q W
Sbjct: 219 NWAGFADSHSPLYKR--PHDQWAYEKLNVNDGLQLW 252


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 221 HQGLVRSQVPHTWNYSALHVHESVQSW 301
           H GL  S V  T N   L V  +++ W
Sbjct: 220 HSGLYPSAVDTTTNQKLLTVDAAIRGW 246


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 166  YTSGYRLEDDQLQGLPPRAPG 228
            Y   +RLE  +  GL  +APG
Sbjct: 1643 YGQSFRLEKPENHGLNAKAPG 1663


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 131 FKQSSPDVIFTKAAMVNTNRR 69
           F +SS DV+  +A    TNR+
Sbjct: 65  FLRSSVDVLLQEAVFEGTNRK 85


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 257 WNYSALHVHE 286
           WN+S +H+ E
Sbjct: 218 WNHSKVHIRE 227


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 140 TCCETCRYHILRVTGSKMTNSKGYRRGH 223
           T C+ CR     + G   + S+  RR +
Sbjct: 56  TACKACRLRKCLLVGMSKSGSRYGRRSN 83


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 169 TSGYRLEDDQLQGLPPRAP 225
           T GY ++  Q+   PP  P
Sbjct: 420 TMGYMMDGQQMMHRPPGDP 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,237
Number of Sequences: 336
Number of extensions: 1588
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6579502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)