Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0337
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 53 1e-08
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 53 1e-08
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 1.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 3.1
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 4.1
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 24 5.4
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 24 5.4
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 24 5.4
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 24 7.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 7.1
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 24 7.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 23 9.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 9.4
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 53.2 bits (122), Expect = 1e-08
Identities = 27/40 (67%), Positives = 28/40 (70%)
Frame = +3
Query: 216 AGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
A TR F R FR HG I L TY+K YKVGDIVDI NGAV
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAV 48
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 53.2 bits (122), Expect = 1e-08
Identities = 27/40 (67%), Positives = 28/40 (70%)
Frame = +3
Query: 216 AGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
A TR F R FR HG I L TY+K YKVGDIVDI NGAV
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAV 48
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 152 FHNTWINFKQSSPDVIFTKAAM 87
F +WIN+KQS ++I T+ +
Sbjct: 416 FRLSWINYKQSQLNIILTETTI 437
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 10 KXNPINNLISHLAIPNLLNSLRLVF 84
K N INN + + +P+L+ LR F
Sbjct: 631 KRNSINNALLAIQLPDLVQKLRTAF 655
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 208 LPPRAPGTCSLA 243
LPPR+PGT SLA
Sbjct: 707 LPPRSPGTGSLA 718
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 24.2 bits (50), Expect = 5.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = +2
Query: 161 YHILRVTGSKMTNSKGYRRGHQGLVRSQVPH 253
++ + G+ + K Y G G++ Q PH
Sbjct: 198 FYTTKTNGNMLDTFKSYEAGFLGMILDQRPH 228
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 24.2 bits (50), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 1 VKSKXNPINNLISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKLIH 141
VK ++ H PN L R FT+ V++ SG LK++H
Sbjct: 723 VKQLKEKASHFKRHSGDPNFLKLYRESFTLINTVSLVSG--WLKMLH 767
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 24.2 bits (50), Expect = 5.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = +2
Query: 161 YHILRVTGSKMTNSKGYRRGHQGLVRSQVPH 253
++ + G+ + K Y G G++ Q PH
Sbjct: 198 FYTTKTNGNMLDTFKSYEAGFLGMILDQRPH 228
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 156 QVSQHVDQLQAKFP*CNIH 100
Q+S+HVD +P C IH
Sbjct: 270 QMSKHVDSFSDVYPTCIIH 288
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 270 LFTYMK-VYKVGDIVDIIGNGAV 335
+F ++K Y VGD VD++ NG V
Sbjct: 650 IFVFVKHPYDVGDRVDVMINGTV 672
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 334 TAPLPMMSTMSPTLYTFMYVKSGIVPCVRNLR 239
T P M T++ +L ++ K PC RN+R
Sbjct: 163 TPGTPFMDTLAKSLRYYIINKLNSDPCWRNVR 194
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 261 TIPLFTYMKVYKVGDIVDII 320
T+ +F Y KV K DI+D++
Sbjct: 857 TLHVFGYFKVNKQKDILDVV 876
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 22 INNLISHLAIPNLLNSLRLVF 84
+N +SH AIPN N V+
Sbjct: 84 VNTQVSHTAIPNPANGYAAVY 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,784
Number of Sequences: 5004
Number of extensions: 23550
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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