Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0337
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 56 5e-09
10_08_0310 - 16669565-16669822,16670558-16670794 54 3e-08
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 28 2.2
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 27 2.9
04_03_0661 - 18468244-18469580,18469610-18469619 27 3.8
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 27 3.8
01_06_0329 + 28515740-28516526,28516597-28516631 27 3.8
01_06_0326 - 28495621-28495655,28495726-28496512 27 3.8
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 27 5.0
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170... 27 5.0
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 26 6.6
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 26 6.6
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 26 6.6
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954... 26 6.6
12_02_0009 + 12247232-12247380,12249821-12249854,12250861-122510... 26 8.7
08_02_1230 + 25419533-25420446,25421098-25421279,25422197-254225... 26 8.7
04_03_0718 + 19005460-19005767,19005854-19006370 26 8.7
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 56.4 bits (130), Expect = 5e-09
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +3
Query: 216 AGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
A TRDLFAR FR G IPL TY++ YK+GD VD+ NGAV
Sbjct: 9 ARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAV 48
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 54.0 bits (124), Expect = 3e-08
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +3
Query: 216 AGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
A TRDLFAR FR G IPL TY++ YK+G+ VD+ NGAV
Sbjct: 9 ARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAV 48
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 138 PRVVKLVDIIYFGLQARR*PTPRVTAAGTRDLFA 239
PR L + + LQ R PTPR ++ D +A
Sbjct: 247 PRASNLTGVEIYSLQTSREPTPRASSFNQADFYA 280
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 173 EVYDIDKF---HNTWINFKQSSPDVIFTKAAMVNTNRRLLS 60
E++DI F HN N K +SP + ++A++N R+ S
Sbjct: 420 ELHDIPLFFSLHNICANVKCTSPSAVLFRSAVLNAGYRISS 460
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 170 VYDIDKFHNTWINFK 126
V ++DKF+N W NFK
Sbjct: 10 VEEVDKFYNFWYNFK 24
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 170 VYDIDKFHNTW-INFKQSSPDVIFTKAAMVNTNRRLLSK 57
V D D F N++ +NF DVI T + + NR +LS+
Sbjct: 35 VLDYDFFRNSYYVNFYMFRDDVIATSSQLQIDNRYILSE 73
>01_06_0329 + 28515740-28516526,28516597-28516631
Length = 273
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 252 CGTCERTSPWCPRR 211
CG CERT WC R
Sbjct: 226 CGKCERTKGWCGYR 239
>01_06_0326 - 28495621-28495655,28495726-28496512
Length = 273
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3
Query: 252 CGTCERTSPWCPRR 211
CG CERT WC R
Sbjct: 226 CGKCERTKGWCGYR 239
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 99 CEYYIRGTLLEVDPRVVKLVDIIYFGLQARR*PTPRVTAAGTRDLF 236
C + + + PRV L + + LQ+ R PTPR ++ + F
Sbjct: 839 CSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGSSFNHAEFF 884
>11_01_0218 -
1704459-1704629,1704895-1705119,1705120-1705277,
1705378-1705463,1705574-1705823,1706220-1707246
Length = 638
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 99 CEYYIRGTLLEVDPRVVKLVDIIYFGLQARR*PTPRVTAAGTRDLF 236
C + + + PRV L + + LQ+ R PTPR ++ + F
Sbjct: 226 CSHGTQSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGSSFNHAEFF 271
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 283 MYVKSGIVPCVRNLR--ANKSLVPAAVTLGVGHLRACN 176
+Y G VR+LR ++ V ++VT+GV H C+
Sbjct: 817 LYYMDGFSRTVRHLRNLVSQDPVQSSVTVGVSHFERCS 854
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/40 (22%), Positives = 23/40 (57%)
Frame = -2
Query: 319 MMSTMSPTLYTFMYVKSGIVPCVRNLRANKSLVPAAVTLG 200
++ + P++ + + +G+V CV + N+ +P+A+ G
Sbjct: 444 LVEIIVPSVVALLLLLAGLVICVIKAKKNRKAIPSALNNG 483
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 283 MYVKSGIVPCVRNLR--ANKSLVPAAVTLGVGHLRACN 176
+Y G VR+LR ++ V ++VT+GV H C+
Sbjct: 817 LYYMDGFSRTVRHLRNLVSQDPVQSSVTVGVSHFERCS 854
>01_06_1233 -
35594510-35594687,35594985-35595100,35595364-35595463,
35595536-35595603,35596940-35597071
Length = 197
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 60 AQ*STVSVYHSSFCEYYI 113
+Q STV YH +FC +YI
Sbjct: 103 SQGSTVLCYHYNFCHFYI 120
>12_02_0009 +
12247232-12247380,12249821-12249854,12250861-12251007,
12251095-12251304,12251452-12251787
Length = 291
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 170 LRVTGSKMTNSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQSWR 304
LR TG K+ + YR G+ T Y H ++ +Q W+
Sbjct: 81 LRETGEKIIGERAYRVMFAGISLPLAVSTVVYFINHRYDGIQLWQ 125
>08_02_1230 +
25419533-25420446,25421098-25421279,25422197-25422543,
25423327-25423557,25423680-25423775,25423934-25424044
Length = 626
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 211 PPRAPGTCSLAGSAHMELFR 270
PP +P CSL GS H + R
Sbjct: 121 PPSSPAQCSLLGSPHDDAAR 140
>04_03_0718 + 19005460-19005767,19005854-19006370
Length = 274
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 206 GYRRGHQGLVRSQVPHTWNYSALHVHESV 292
G+ RG G VRS PH + S + E+V
Sbjct: 127 GFARGDDGAVRSATPHLFLLSCQILTENV 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,876
Number of Sequences: 37544
Number of extensions: 162155
Number of successful extensions: 494
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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