Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0337
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       52   2e-07
SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.41 
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.71 
SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +3

Query: 219 GTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
           GTR +F+++FR  G   L TY+K YKVGDIVD+  NGAV
Sbjct: 432 GTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAV 470


>SB_29257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 169 TSGYRLEDDQLQGLPPRAPGTCSLAGSAH 255
           ++G+++E+DQL GLPP+     SL   A+
Sbjct: 391 STGFKMENDQLPGLPPKPDRPLSLQRDAN 419


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 185 SKMT-NSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQSWRH 307
           S MT N  G    H G+ R+    TWNYS +  + S  +W +
Sbjct: 121 SGMTRNYSGMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 185 SKMT-NSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQSWRH 307
           S MT N  G    + G++R+    TWNYS +  + S  +W +
Sbjct: 79  SGMTRNYSGMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 185 SKMT-NSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQSWRH 307
           S MT N  G    H G+ R+    TWNYS +  + S  +W +
Sbjct: 121 SGMTRNYSGMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNY 162



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 185 SKMT-NSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQSWRH 307
           S MT N  G    + G++R+    TWNYS +  + S  +W +
Sbjct: 79  SGMTRNYSGMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNY 120


>SB_12112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 278 VHESVQSWRHCRHHRQ 325
           VH S +SWRH R H++
Sbjct: 84  VHVSARSWRHSRTHQR 99


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 39  TFSYSQFAQ*STVSVYHSSFCE 104
           TFS S++   +T S+Y+SS+C+
Sbjct: 212 TFSISRYRVINTRSIYNSSYCQ 233


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +3

Query: 81  VYHSSFCEYYIRGTLLEVDPRVVKLVDIIYFGLQARR 191
           VY++   + Y+ G  L V PR  +L++I+ FG+ A++
Sbjct: 453 VYYAPKAKTYMFGLELTV-PRAARLLEIMDFGIVAQK 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,779,835
Number of Sequences: 59808
Number of extensions: 185066
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)