Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0337
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...    46   5e-06
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    29   1.1  
AF003384-2|AAL08040.1|  428|Caenorhabditis elegans Acyltransfera...    28   1.4  
AF003384-1|AAK71374.2|  415|Caenorhabditis elegans Acyltransfera...    28   1.4  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    28   1.4  
Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    27   2.5  
Z93382-1|CAB07610.2|  270|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 23/38 (60%), Positives = 25/38 (65%)
 Frame = +3

Query: 219 GTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGA 332
           GTR +FAR FR HG   L TY   YK GD+VDI  NGA
Sbjct: 10  GTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGA 47


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 158 RYHILRVTGSKMTNSKGYRRGHQ-GLVRSQVPHTWNYSALHVHESVQSWRHCRHHRQ 325
           ++ +L V G  + N++   R HQ    ++   H +N    H H+  Q  +H    +Q
Sbjct: 7   QFSLLLVLGVAVQNTESQYRQHQPSYPQNYQNHNYNAHQQHYHQQQQQQQHAHQQKQ 63


>AF003384-2|AAL08040.1|  428|Caenorhabditis elegans
           Acyltransferase-like protein 14,isoform b protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 329 TIAYDVYNVSNFVHFHVREERNSSMCAEPASEQVP 225
           T  YDVY   + V  + R+ER   MC   ++  VP
Sbjct: 99  TAGYDVYEYGDDVTTYYRDERVLMMCNHQSTADVP 133


>AF003384-1|AAK71374.2|  415|Caenorhabditis elegans
           Acyltransferase-like protein 14,isoform a protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 329 TIAYDVYNVSNFVHFHVREERNSSMCAEPASEQVP 225
           T  YDVY   + V  + R+ER   MC   ++  VP
Sbjct: 97  TAGYDVYEYGDDVTTYYRDERVLMMCNHQSTADVP 131


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 31  LISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKLIHVL*NLSISYTS 174
           L S  A  ++L + +    +    N  S EL L+++HV+ NLSI + S
Sbjct: 721 LCSKSACEDILKNGKFASLVWCLQNCNSDELHLEVLHVIRNLSIVHKS 768


>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 16  NPINNLISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKLIHVL*NLSISYTSGYRL 186
           NP+ N I ++ + +LL +L L       +N        +L+H+  N+ I YT GY +
Sbjct: 40  NPVENFIYNIWMFHLLIALFLS-VFCKTLNFAIYRAGFRLLHMCYNVYILYTLGYMI 95


>Z93382-1|CAB07610.2|  270|Caenorhabditis elegans Hypothetical
           protein F45G2.1 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 329 TIAYDVYNVSNFVHFHVREERNS 261
           TI +++ +V  F+H H RE+R+S
Sbjct: 159 TIIHELMHVIGFIHEHQREDRDS 181


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 194 TNSKGYRRGHQGLVRSQVPHTWNYS 268
           TN+ GY+   Q  V +QVP T+  S
Sbjct: 333 TNAGGYQTSQQQQVANQVPQTYGQS 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,302
Number of Sequences: 27780
Number of extensions: 135852
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)