Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0337
         (335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   0.75 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.0  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    20   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 6/35 (17%), Positives = 16/35 (45%)
 Frame = -1

Query: 332 CTIAYDVYNVSNFVHFHVREERNSSMCAEPASEQV 228
           CT+ ++ +     +  H++   +SS+   P    +
Sbjct: 262 CTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 QLQGLPPRAPGTCSLAGSA 252
           +L+G+P   P TC +  S+
Sbjct: 583 KLKGIPDPXPNTCKVIASS 601


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 196 GHLRACNPKY 167
           G LRA NP+Y
Sbjct: 55  GRLRAINPEY 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,694
Number of Sequences: 438
Number of extensions: 1713
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)