Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0337
(335 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 55 1e-08
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 55 1e-08
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 55 1e-08
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 55 1e-08
At4g35910.1 68417.m05103 expressed protein 29 0.77
At5g57090.1 68418.m07128 auxin transport protein (EIR1) identica... 29 1.0
At2g15130.1 68415.m01724 plant basic secretory protein (BSP) fam... 28 1.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 3.1
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 3.1
At3g06850.2 68416.m00813 branched chain alpha-keto acid dehydrog... 27 3.1
At3g06850.1 68416.m00812 branched chain alpha-keto acid dehydrog... 27 3.1
At3g61390.2 68416.m06872 U-box domain-containing protein several... 26 5.4
At5g40540.1 68418.m04920 protein kinase, putative similar to pro... 26 7.2
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 26 7.2
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 25 9.5
At1g23520.1 68414.m02956 expressed protein contains Pfam profile... 25 9.5
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 25 9.5
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 195 PTPRVTAAGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
P A TRDLFAR FR G IPL TY++ +KVGD VD+ NGA+
Sbjct: 2 PAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAI 48
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 195 PTPRVTAAGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
P A TRDLFAR FR G IPL TY++ +KVGD VD+ NGA+
Sbjct: 2 PAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAI 48
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 195 PTPRVTAAGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
P A TRDLFAR FR G IPL TY++ +KVGD VD+ NGA+
Sbjct: 2 PAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAI 48
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/47 (55%), Positives = 31/47 (65%)
Frame = +3
Query: 195 PTPRVTAAGTRDLFARRFRTHGTIPLFTYMKVYKVGDIVDIIGNGAV 335
P A TRDLFAR FR G IPL TY++ +KVGD VD+ NGA+
Sbjct: 2 PAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAI 48
>At4g35910.1 68417.m05103 expressed protein
Length = 458
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 137 STCCETCRYHILRVTGSKMTNSKGYRRGHQGLVRSQVPHTWNYSALHVHESVQ 295
+ CC +CR+ IL GS + + H + SQV H S ++ E ++
Sbjct: 398 AACCSSCRFQILPQDGSSLEQFSSFLPDH---MISQVKHQKVDSQAYLREKIK 447
>At5g57090.1 68418.m07128 auxin transport protein (EIR1) identical
to auxin transport protein EIR1 [Arabidopsis thaliana]
gi|3377507|gb|AAC39513; identical to root gravitropism
control protein [Arabidopsis thaliana]
gi|4322486|gb|AAD16060
Length = 647
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +3
Query: 132 VDPRVVKLVDIIYFGLQARR*PTPRVTAAGTRDLFARRFRTHGTIPLFTYMKVY 293
+ PR L + + +Q+ R PTPR ++ D +A + P Y Y
Sbjct: 232 ITPRASNLTGVEIYSVQSSREPTPRASSFNQTDFYAMFNASKAPSPRHGYTNSY 285
>At2g15130.1 68415.m01724 plant basic secretory protein (BSP) family
protein similar to NtPRp27 [Nicotiana tabacum]
GI:5360263; contains Pfam profile PF04450: Plant Basic
Secretory Protein
Length = 225
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 170 LRVTGSKMTNSKGY-RRGHQGLVRSQVPHTWNYS 268
+ + + KGY RRG G+V +V H+W ++
Sbjct: 96 IHYNAGSLVDDKGYVRRGFTGVVYHEVVHSWQWN 129
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 3.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 296 SWRHCRHHRQWCS 334
+WR RH+++WCS
Sbjct: 385 AWRELRHNKKWCS 397
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 251 HTWNYSALHVHESVQSWRHCRHHRQWCS 334
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At3g06850.2 68416.m00813 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 10 KXNPINNLISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKLI 138
K N ++ I H +P L+ SL + T FVN L++I
Sbjct: 296 KENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEII 338
>At3g06850.1 68416.m00812 branched chain alpha-keto acid
dehydrogenase E2 subunit (din3) identical to branched
chain alpha-keto acid dehydrogenase E2 subunit (din3)
[Arabidopsis thaliana] GI:7021284
Length = 483
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 10 KXNPINNLISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKLI 138
K N ++ I H +P L+ SL + T FVN L++I
Sbjct: 296 KENNTDSTIKHTFLPTLIKSLSMALTKYPFVNSCFNAESLEII 338
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 200 SKGYRRGHQG--LVRSQVPHTWNYSALHVHESVQSWRHCR 313
S+ + RGH+ ++ ++PHT L + ++Q W R
Sbjct: 384 SRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQLR 423
>At5g40540.1 68418.m04920 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 353
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 208 LPPRAPGTCSL 240
LPP +PGTCSL
Sbjct: 314 LPPESPGTCSL 324
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 317 DVYNVSNFVHFHVREERNSSM 255
DV+NV VHF + N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 25 NNLISHLAIPNLLNSLRLVFTIAAFVNITSGELCLKL 135
NNL+S + PNL +S +L+ +F N SG++ + L
Sbjct: 182 NNLLSEIIPPNLADSSKLLRLNLSF-NSLSGQIPVSL 217
>At1g23520.1 68414.m02956 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 263
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 236 RSQVPHTWNYSALHVHESVQSWRHCRHHRQW 328
RS++ +T + + E ++ WRH QW
Sbjct: 29 RSEIKNTDHEERNEMKEQLKLWRHAEKKEQW 59
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 43 LAIPNLLNSLRLVFTIAAFVNITSGELCLKLIHVL*NLSISYTSGYRL 186
LA+ L N++ + F+N+ S L LK H+L L G RL
Sbjct: 522 LAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRL 569
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,799,794
Number of Sequences: 28952
Number of extensions: 127280
Number of successful extensions: 366
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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