Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0336
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.86
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 26 4.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 4.6
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 4.6
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo... 26 6.1
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 6.1
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 8.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 8.0
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 8.0
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 446 SHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGVYPKKFPCGPRSR 583
S L PLD+S EK K +E G+YPK+ P + R
Sbjct: 341 SSLSPLDHSSAEKEMQKAPAKNKRRRTGSLETGLYPKESPTPSKKR 386
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.0
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Frame = -2
Query: 444 PSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPSSRTLDLSA 265
P S+TT++T + S L SST I + + + L +S P + + L+
Sbjct: 3155 PITSSTTLNTSTPITSSSVLNSSTAI--TSSSIVNSSTPITSSSVLNSSTPITSSTTLNT 3212
Query: 264 ASPVHTFQLTETSAA---SFLVTSWL*AVAAWLTSTIANVRSXXXXXXXXXXXXXPTANA 94
++P+ + + +S A S ++ S ++ + ++ + S N+
Sbjct: 3213 STPITSSSVLNSSTAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 3272
Query: 93 ATAKTSAII---RCPITGSTKKQTSKRETRLTS 4
+T TS+ + PIT ST +S T T+
Sbjct: 3273 STPITSSTVVNTSTPITSSTVVNSSTPITSSTT 3305
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 187 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHRENERYHPMPHNWFY 44
G++++ +D E LA +R PW +A RGH + P+ FY
Sbjct: 462 GKIIEGNDVEGVLA---IRSPWPSAARTVWRGHDRYIDTYLKPYPGFY 506
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 336 AADVALPAPLQTSFPSSRTLDLSAASPVHTFQLT 235
+ LP+ +S P SRT +LS+ + + T ++T
Sbjct: 81 STSTTLPSATSSSVPQSRTSELSSTNSIPTPRIT 114
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 613 SRRVNESGSVPGTRSTGKLFRIHTPFDEVSAHHF 512
S +V ++ S T+ST KL+ I TPF E+ H+F
Sbjct: 235 SLKVYKTISPLHTQSTDKLYTIWTPFSEL--HYF 266
>SPBC4B4.01c |||fumble family pantothenate kinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 571 STGKLFRIHTPFDEVSAHHFSRSLL 497
S GK+FR P +E + SRSLL
Sbjct: 293 SFGKVFRERKPLEEFAPQDISRSLL 317
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 93 ATAKTSAIIRCPITGSTKKQTSKRETRLTS 4
AT KTS+ + TG K+ K ET LTS
Sbjct: 222 ATKKTSSSVPKQSTGENTKKAVKLETPLTS 251
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 657 FKLSLMPSPPQIGNEAVE*MSQVR 586
FKL+ PS P +GN A + +S R
Sbjct: 376 FKLTSRPSTPNVGNTAPDALSSPR 399
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 94 GHRENERYHPMPHNW 50
G EN +YHP P +W
Sbjct: 47 GKWENHQYHPSPDDW 61
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 362 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 505
Y + +C ++ +S ++ VVA D ++ +DY + FK+T
Sbjct: 862 YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,814
Number of Sequences: 5004
Number of extensions: 55209
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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