Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0336
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 33 0.22
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 31 0.90
07_03_1080 + 23815232-23817040 30 1.6
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 30 2.1
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 29 2.7
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 29 2.7
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 29 2.7
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 29 2.7
09_06_0184 - 21413275-21414267 29 3.6
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 3.6
02_03_0099 + 15206282-15206917 29 3.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 3.6
03_05_1074 + 30168065-30168577 29 4.8
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 6.3
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 28 8.4
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -1
Query: 328 CGAAGTAPDFLPIEQDSGLVGRVAGPHVPVDGDVSGVLLGHELVVSCGRLVDFDD 164
CG+A T P+E+D G V RV VD +G L G GR D DD
Sbjct: 64 CGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGG-----GGGRRDDVDD 113
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 244 PVDGDVSGVLLGHELVVSCGRLVDFDDRERALAPAEVRFP 125
P D D+S ++G + ++S L +D E APAE + P
Sbjct: 312 PQDNDLSSYMVGDKSILSDAGLKSIEDVEALPAPAETKMP 351
>07_03_1080 + 23815232-23817040
Length = 602
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = +2
Query: 308 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 487
SG G+A+S A GGR+ Q+ L C+ S VA D ++ L + + E
Sbjct: 173 SGGGTASSGAVGGGGGGRWASQLLL----ECARS------VAARDSQRVQQLMWMLNELA 222
Query: 488 KPFKQTSGKVVGAYFVEWGVYPKKFPCGPRS 580
P+ K + +YF++ G++ + GPR+
Sbjct: 223 SPYGDVEQK-LASYFLQ-GLFARLTASGPRT 251
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 353 GGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKVVGAYF 532
GG+ + VEL + + GV V T +D+S GE + TSG G
Sbjct: 134 GGQVKYVVELARA--LAMMPGVYRVDLFTRQVSSPEVDWSYGEPTEML--TSGSTDGEGS 189
Query: 533 VEW-GVYPKKFPCGPRSRY 586
E G Y + PCGPR +Y
Sbjct: 190 GESAGAYIVRIPCGPRDKY 208
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 255 PATRPTSPESCSMGRKSGAVPAAPHQPLSK*RRVEDTRCRSSSATQTDAA 404
PA+ +S S S + ++P P S RR+ RC SSS++ +A
Sbjct: 25 PASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRIPPLRCASSSSSSQGSA 74
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 255 PATRPTSPESCSMGRKSGAVPAAPHQPLSK 344
P T+PT+P S + S P P QP+ +
Sbjct: 167 PTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = -1
Query: 316 GTAPDFLPIEQDSGLVGRVAGPHVPVD-GDVSGVLLGHE--LVVSCGRLVDFDDRERALA 146
G P + D+ G +G + D L G E LV DF D E +A
Sbjct: 737 GVLPAMVANGDDASNAGSASGLEDLIHYDDAFYFLTGEEGLLVFRVSEFHDFKDEELDIA 796
Query: 145 PAEV-RFPWRAAGADGE 98
P E+ RFP R G GE
Sbjct: 797 PIEIRRFPRRGRGHYGE 813
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 187 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHRENERYHPMP 59
GR D DD R P R+P +G G G RE+ + P
Sbjct: 191 GRSDDIDDWSRDKKPMPSRYPSLGSGGGGGGGFRESPGFRDSP 233
>09_06_0184 - 21413275-21414267
Length = 330
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -2
Query: 522 PTTFPEVCLKGLFFSPIE*SRGLKWLPSVSATTISTPSLELHPSELQS--STCIWYLPPF 349
P T EV L L+ SP + +W P + +++ S L S T + +LP
Sbjct: 28 PCTASEVHLPPLWSSPSD-----RWSPHIGTPGSHIGAVQAPASSLSSCSETAVSFLPAP 82
Query: 348 FTLKAADVALPAPLQTSFPSSRTLDLSAASP 256
+ + P+P S PSS T S P
Sbjct: 83 ALPTSMESTFPSPRPPSTPSSSTPPSSPVPP 113
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 296 KEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRPL 463
+E+WSGA SA K KK + ++ DG S VEIV+ + L +
Sbjct: 620 RELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELASV 677
Query: 464 DYSIGEKN 487
+ S E N
Sbjct: 678 ELSFAENN 685
>02_03_0099 + 15206282-15206917
Length = 211
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 275 SRVLLDGKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 442
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 624 IGNEAVE*MSQVRYRERGPQGNFLGYTP 541
+GN A E + + ++ E GP NFL Y P
Sbjct: 589 LGNSAAESLVRSKFEEFGPLANFLFYPP 616
>03_05_1074 + 30168065-30168577
Length = 170
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = +2
Query: 224 ADVSVNWNVWTGDAADKSRVLLDGKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCS 403
A +VN +G+A VL DG G+ S A K GG LC++DG
Sbjct: 11 AVAAVNGRSASGEATAARVVLADGALRRFPGGTRASQAVKAAGGGGGGSSWFLCSADGLE 70
Query: 404 SSEGVEIVVADTDGSHLRP 460
V V D L+P
Sbjct: 71 LGAAV-AAVGGGDDEELQP 88
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 310 APDFLPIEQDSGLVGRVAG-PHVP 242
A DF+P +QD GLVG G P VP
Sbjct: 925 ADDFIPEDQDGGLVGFPRGQPDVP 948
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 27.9 bits (59), Expect = 8.4
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +2
Query: 353 GGRYQMQVELCNSDGCSSSEGV--------EIVVADTDGSHLRPLDYSIGEKNKPFKQTS 508
GG+ + VEL + SS GV +I+ + D S+ P++ K FKQ
Sbjct: 195 GGQVKYVVELAKA--LSSCPGVYRVDLFTRQILAPNFDRSYGEPVEPLASTSFKNFKQER 252
Query: 509 GKVVGAYFVEWGVYPKKFPCGPRSRY 586
G+ GAY + + P GP+ +Y
Sbjct: 253 GENSGAYII-------RIPFGPKDKY 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,355,049
Number of Sequences: 37544
Number of extensions: 421490
Number of successful extensions: 1345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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