Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0336
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)                       31   0.92 
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   1.2  
SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)                  29   3.7  
SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  28   8.5  

>SB_18674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -2

Query: 459 GLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSF-PSSR 283
           G + +  VS+TT   P+ EL+  E+ S+T +  +P   +L      +P+P  +S  PSS 
Sbjct: 96  GWRGIEEVSSTT-DIPATELNKGEISSTTIVPSVPIPTSLD-----MPSPDISSIEPSST 149

Query: 282 TLDLSAASPVHTFQLTETSA 223
           +L   A+SPV T    E  A
Sbjct: 150 SLHTQASSPVSTSDTIECKA 169


>SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)
          Length = 396

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
 Frame = +2

Query: 140 GWGERTFAIVE-VNQAATAYNQLVTKKDAADVSV-NWNVWTGDAADKSRVLLDGKEVWSG 313
           G G+R    +E V  AA +YN L   +      V N +     A+    V   GK +  G
Sbjct: 68  GPGDRLCDELEKVMLAAVSYNNLEVMEACRRYGVVNLDEALACASSHGHVGAVGKCLEWG 127

Query: 314 AGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKP 493
           AG     A +    GR+   V +    G   S+ VE  + D DG H   L+Y   E  + 
Sbjct: 128 AGGL-GRALRCAVSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERA 185

Query: 494 FK 499
            K
Sbjct: 186 GK 187


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
 Frame = +2

Query: 140  GWGERTFAIVE-VNQAATAYNQLVTKKDAADVSV-NWNVWTGDAADKSRVLLDGKEVWSG 313
            G G+R    +E V  AA +YN L   +      V N +     A+    V   GK +  G
Sbjct: 735  GPGDRLCDELEKVMLAAVSYNNLEVMEACRRYGVVNLDEALACASSHGHVGAVGKCLEWG 794

Query: 314  AGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKP 493
            AG     A +    GR+   V +    G   S+ VE  + D DG H   L+Y   E  + 
Sbjct: 795  AGGL-GRALRCAVSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERA 852

Query: 494  FK 499
             K
Sbjct: 853  GK 854


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 344 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 451
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)
          Length = 657

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
 Frame = +2

Query: 170 EVNQAATAYNQLVTKKDAADVSV-NWNVWTGDAADKSRVLLDGKEVWSGAGSATSAAFKV 346
           +V  AA +YN L   +      V N +     A+    V   GK +  GAG     A + 
Sbjct: 432 KVMLAAVSYNNLEVMEACRRYGVVNLDEALACASSHGHVGAVGKCLEWGAGGL-GRALRC 490

Query: 347 KKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFK 499
              GR+   V +    G   S+ VE  + D DG H   L+Y   E  +  K
Sbjct: 491 AVFGRHLETVRMLRGVGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERAGK 540


>SB_25790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 547 HTPFDEVSAHHFSRSLLEGFIFL-TNRIIER 458
           H   +E     +SR +LEG ++L TNRI+ R
Sbjct: 10  HGALNESLTRKYSRQILEGILYLHTNRIVHR 40


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 282 SCSMGRKSGAVPAAPHQPLSK*RRVEDTRCRSSSATQTDAALA 410
           SC  GR S  VP APH+ ++    + +T  R+S    T+   A
Sbjct: 232 SCDGGRLS--VPGAPHEAMANGVSISNTSVRTSENNNTNDGFA 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,469
Number of Sequences: 59808
Number of extensions: 429242
Number of successful extensions: 1222
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)