Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0336
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 35 0.050
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 29 4.3
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 7.5
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 7.5
AC006655-5|AAF39873.1| 172|Caenorhabditis elegans Hypothetical ... 28 7.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 9.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 9.9
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 35.1 bits (77), Expect = 0.050
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 456 LKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPSSRTL 277
LK L S IS P + P + ST P TLK++ V P+ +QT PSS
Sbjct: 427 LKKLQFDSQKPISAPPSDQTPVT-KPSTVFGQKPEAETLKSSLVGSPSSVQTPKPSSSLF 485
Query: 276 D-LSAASPVHTFQLTETSAAS 217
+ S AS + T QLTE+ ++
Sbjct: 486 NPKSIASNIETSQLTESKPST 506
>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
protein Y67D8C.9 protein.
Length = 1073
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = -2
Query: 465 SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFPS 289
S K L + +ST + ++ S LQS + Y P F A++A + + T+ S
Sbjct: 944 SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003
Query: 288 SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 199
+ + D+ AS + H+ + + E L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 429 TTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPS 289
TT++TP++ + + + SS + PP AA AP+ T+ P+
Sbjct: 573 TTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPT 619
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 429 TTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPS 289
TT++TP++ + + + SS + PP AA AP+ T+ P+
Sbjct: 629 TTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPT 675
>AC006655-5|AAF39873.1| 172|Caenorhabditis elegans Hypothetical
protein H10D18.1 protein.
Length = 172
Score = 27.9 bits (59), Expect = 7.5
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 167 VEVNQAATAYNQLVTKKDAADVSVNWNVW 253
+E+++ AY Q+++ K +D ++ WN++
Sbjct: 3 LEISEKIKAYRQVMSAKSPSDAALTWNLF 31
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 244
G K N+G GER ++ +QAA + L + + DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 244
G K N+G GER ++ +QAA + L + + DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 244
G K N+G GER ++ +QAA + L + + DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 GPPGKPNLGWGERTFAIVEVNQAATAYNQLVTKKD---AADVSVNW 244
G K N+G GER ++ +QAA + L + + DVS++W
Sbjct: 1374 GVAAKSNVGAGERVSLEIQTDQAAPSGAPLYLRTEDIRPTDVSISW 1419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,402
Number of Sequences: 27780
Number of extensions: 320103
Number of successful extensions: 948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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