Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0336
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 208 HELVVSCGRLVDFDDRER 155
           H LV + GRL+DF ++ R
Sbjct: 325 HILVATPGRLLDFVEKGR 342


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 143 WGERTFAIV-EVNQAATAYNQLVTK 214
           WG++TF I+ + N   ++ N +  K
Sbjct: 70  WGDKTFVIIMKFNGVPSSLNVITNK 94


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 308 SGAGSATSAAFKVKKGGRYQMQVELC 385
           +G GS+     + KKG   + Q ELC
Sbjct: 162 NGYGSSDGCDARKKKGPTPRQQEELC 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,122
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)