Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0336
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.75 
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    29   2.3  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 317 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHL 454
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
 Frame = +2

Query: 167 VEVNQAATAYNQLVTKKDAADVSVNWNVWTGDAADKSRVLLDGKEVWSGAGSATSAAFKV 346
           V+V +     +  V+K      S+N + W+        ++L  KE    +G+ +   +  
Sbjct: 307 VDVEKVGADTDLYVSKHPVLFPSLNQHEWSSHDVGSKTLILVSKERALSSGTYSIGVYGF 366

Query: 347 KKGGRYQMQVELCNS-DGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 487
           K   +YQ+ V +  S DG    E      +D D    R   +SI  ++
Sbjct: 367 KGTVKYQVSVLVQESIDGAKVGERAVSSSSDVDTVECRNCKHSIPSRS 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,192
Number of Sequences: 28952
Number of extensions: 310886
Number of successful extensions: 845
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)