Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0335
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   1.4  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   1.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.2  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   4.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   5.5  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 288 FSRGCLRRWLCSFFTYTGTGWKCSNLID 205
           FS+G ++  +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLD 165


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/101 (22%), Positives = 40/101 (39%)
 Frame = +2

Query: 107 EAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLE 286
           + P+++   D+ + I +    HQ  H + K H        HP        H H    P  
Sbjct: 50  QGPELKTALDNLNFIHKQKFEHQFRHGYWKLHP-------HP-------HHQHDSIIPAS 95

Query: 287 KGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGL 409
                 ++KL+    ++   G L+LE+D  N   +  S G+
Sbjct: 96  WIHDTPHMKLVFHRLQNLPDGDLLLENDPKNNVGYFISGGI 136


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 475 SVFQTSMLQTLFQTAVFKASVLKTS--RSNMVFNVVS 371
           SV   S+LQTLFQT +  A++      R  M FN+++
Sbjct: 46  SVKTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILA 82


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 437 DRRVQSFRAQDQQKQYGVQCCVCRPRGQVHR 345
           +R+ ++FR +D+    G++C V R +   HR
Sbjct: 381 ERKEKAFRKKDEDSAAGLRCLVFRIKYLAHR 411


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 PVPVYVKKEHSHLLKHPLEKGKSEQNLKL 316
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,874
Number of Sequences: 5004
Number of extensions: 45837
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)