Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0335
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          34   0.12 
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)                31   0.62 
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     31   1.1  
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   2.5  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              29   4.4  
SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85)                   29   4.4  
SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    28   5.8  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                28   5.8  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                28   5.8  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           28   5.8  
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = -1

Query: 604 VMTVVLWLLKFSVSLQ---AFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQT 434
           V+  V W++KF  SL     ++S +  + T   ++TS+   +  + SVF  S   TL  T
Sbjct: 38  VIPNVTWVIKFISSLTRLVTYSSNVTRDVTVISIVTSIFRISSSVISVFTLSFSVTLVVT 97

Query: 433 AVFKASVLKTSRSNMVFNVVSV 368
            +  +SV+  + S+ V +VV V
Sbjct: 98  VI--SSVIVVTISSSVTSVVKV 117


>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
          Length = 641

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 164 HHHQIE-HEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHK 340
           HHHQ + ++H + HQ  + +H      + KK++ H   H  ++ +     +    +  H+
Sbjct: 570 HHHQKQQNQHHRHHQKQQNQHHRH---HQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHR 626

Query: 341 HG 346
           HG
Sbjct: 627 HG 628



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 101 HDEAPQVEAKYDHQSLIGESGHHHQ-IEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKH 277
           H +  Q +    HQ    +   HHQ  +++H + HQ  + +H H    + K+++ H  +H
Sbjct: 571 HHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHR---HRKQQNQHHHRH 627


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = -1

Query: 574 FSVSLQAFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQT-AVFKASVLKTSR 398
           F  S    +S IAF+ T  +L TS+L  T  I S  Q +    L    +V  +SV+++S+
Sbjct: 656 FESSADVSSSSIAFDITS-ILSTSVLPETTSIQSTMQPNTSTVLSSVDSVDSSSVVESSQ 714

Query: 397 SNMVFNVVSVVLEDKSTAVLVF 332
           S     + S   E  S    ++
Sbjct: 715 SRTAATINSTTQESSSFQTSIY 736



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = -1

Query: 574 FSVSLQAFASFIAFEATR*VLITSLLETTMLIASVFQTSMLQTLFQTAVFKASVL----- 410
           F  S    +S IAF+      ITS+  T++L  +  + SM+Q +  T+    SVL     
Sbjct: 607 FESSADVSSSSIAFD------ITSIRSTSVLPGTTSKLSMIQPITSTSFTTTSVLFESSA 660

Query: 409 KTSRSNMVFNVVSVVLEDKSTAVL 338
             S S++ F++ S++    ST+VL
Sbjct: 661 DVSSSSIAFDITSIL----STSVL 680


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 166 PSSN*TRT-RQISPVDQVRTLPPRSCVREEGAQPPSQAPS*KGKIRAKPQADSPR 327
           PSS    T +Q +PV  + T+PP +   E     P+Q    + K   KP+ + P+
Sbjct: 20  PSSGKGATPQQAAPVAALPTIPPPTTAPEPAKNQPAQDKKKEKKSEKKPKTEKPK 74


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 65  LIAAVTAFPGIIHDEAPQV--EAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVP 238
           L +A+T   G I +   QV  E   +HQ L+      H  E E+ K   + + +H H   
Sbjct: 436 LESAITVLEGRIKEREEQVRNELHEEHQYLMENLKKEHFEEVENLKHEHAAELDHLHETL 495

Query: 239 VYVKKEHSHL 268
             V+ E+  L
Sbjct: 496 ESVQMENGEL 505


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 155 ESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 265
           +S  + +  H++   H  I F + HP+PV +KK   H
Sbjct: 613 DSASNFKSIHDNLLQHVQIPFFNIHPMPVSLKKSFCH 649


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 164 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 265
           HHH  +H H   H +    H H    Y    H H
Sbjct: 218 HHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHH 251


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 155  ESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKK 253
            E  + H+ EHEH  S   I FE   P+P  V++
Sbjct: 3130 EEANEHEQEHEHDTSGDHIHFEPIIPLPDKVER 3162


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +2

Query: 23  SNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYD-HQSLIGESGHHHQIE-HEHAK 196
           + +AT  KY      +A  T F    H    +V A+Y  HQ  +    H HQ +   H  
Sbjct: 239 ATMATNTKYS--RATMATNTVFARY-HGHQYKVFARYHGHQYKVFARYHGHQYKVFAHYH 295

Query: 197 SHQSIKFEHFHPVPVYVKKEHSHLLK 274
            HQ   F  +H     V+  H H  K
Sbjct: 296 GHQYKVFARYHGHQYSVRARHGHQYK 321


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
 Frame = +2

Query: 125 AKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLK------HPLE 286
           A   H  +   S  H  I H     H  +     HP   Y    H H+ +      HP  
Sbjct: 29  ASTTHPHIAHASTTHPYITHASTTHHYIVHASTTHPYITYASTTHPHIARASTPTTHPYI 88

Query: 287 KGKSEQNLKLIHPETEHKH 343
              S  +  ++H  T H +
Sbjct: 89  THASTTHHYIVHASTTHPY 107


>SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85)
          Length = 608

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 251 KEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGG 349
           +E    L HPL+ G++ Q+++ I  E E KHGG
Sbjct: 12  EEQPQPLSHPLDHGETGQSVE-IGGEEETKHGG 43


>SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 98  IHDEAPQVEAKYDHQSLIGESGH-HHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLK 274
           +H++   V+   DH  L  +  H H++ +H H   H   K +H H  P ++ K  ++   
Sbjct: 17  VHNKPDHVQNNPDH--LNNKPDHVHNKRDHVHMSDHVPSKPDHVHNKPDHMYKNPANWPD 74

Query: 275 H 277
           H
Sbjct: 75  H 75


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +2

Query: 164  HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHS-HLLKHP-LEKGKSEQNLKLI-HPETE 334
            H H   H H   H+  + +           + + +L  HP L   +++Q L    HPE  
Sbjct: 898  HSHMHTHFHIHPHEQ-QLQAAQAAAAAANMDRAAYLQSHPGLAAWRNQQLLAWQQHPELM 956

Query: 335  HKHGGGLVLEDDRHNIEHHIASAGLEHG 418
              HGG LV  +D     H  A+AG+ HG
Sbjct: 957  QLHGGALVSPED-----HPHAAAGI-HG 978


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 143 SLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEH 259
           +LI E   H   ++  AK H  + + H HPVP   +  H
Sbjct: 323 TLIKELSAHLGSDNRLAKMHLRLLYSHGHPVPYQTQDVH 361


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/76 (25%), Positives = 27/76 (35%)
 Frame = +2

Query: 20  NSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKS 199
           NSN+   +  H  + L      F G  H +      +Y H      + H H   H H   
Sbjct: 14  NSNIGNNVTRHSDMHL-----RFYGCYH-KLKNPRHRYHHHHHHQHNHHQHHHHHNHHHH 67

Query: 200 HQSIKFEHFHPVPVYV 247
           HQ     H H + + V
Sbjct: 68  HQQHHHHHHHIINIIV 83


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 170 HQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQ 304
           H I+  +     S   +  H + VYVK    HL+ + LE  K E+
Sbjct: 296 HFIQERNRHHTLSFATKRAHDLVVYVKLYTEHLMSNQLESAKKEE 340


>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
 Frame = +2

Query: 104 DEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKE----HSHLL 271
           D+A   E  Y        + H+ +IE +++ +     ++   P P+YV KE    H  LL
Sbjct: 164 DKALVNELDYSGVEFPVTTKHYSRIEKQNSININVFSYDDKQPYPIYVSKERFEDHMELL 223

Query: 272 KHPL---EKGKSEQNL------KLIHPETEHKH 343
              L     G ++  L      K I  +T+HKH
Sbjct: 224 LMVLLLITDGSNQHYLLIKDFNKFIFKQTKHKH 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,498
Number of Sequences: 59808
Number of extensions: 373705
Number of successful extensions: 1352
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)