Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0335
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.21 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.28 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.84 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +2

Query: 164 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKH 343
           HHH + H H+  H +    H H    +    H H    PL        +++ H    H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPH----HQH--STPLAHSSYPAAIQIGHTPHHHPH 468


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +2

Query: 176 IEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE 301
           ++ E  + ++ +K +      +Y+K  H+H  K  LE+ K++
Sbjct: 45  VQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTK 86


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 162 PDSPIKDWWSYFASTWGA 109
           P SP+ DW+S  AS+W A
Sbjct: 426 PISPLNDWYS-LASSWPA 442


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 126 ASTWGASSCIIPGKAVTAAMS 64
           A+ +GA+S ++PG   TAA S
Sbjct: 109 AAAFGATSSMVPGFGSTAASS 129


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 IKFEHFHPVPVYVKKE 256
           I ++H+H  PV+ K++
Sbjct: 6   IHYQHYHITPVFTKQK 21


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 299 EQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 400
           EQNL L      +  GG  +     H   HH+ S
Sbjct: 136 EQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDS 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,464
Number of Sequences: 438
Number of extensions: 3309
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)