Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0335
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04620.1 68415.m00470 cation efflux family protein potential ... 34 0.096
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 32 0.39
At2g43120.1 68415.m05355 pirin, putative similar to SP|O00625 Pi... 31 0.89
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 30 1.6
At2g36710.1 68415.m04504 pectinesterase family protein contains ... 25 3.3
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r... 28 4.8
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor... 28 6.3
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 28 6.3
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 28 6.3
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 27 8.3
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 27 8.3
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 27 8.3
At1g12380.1 68414.m01431 expressed protein 27 8.3
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 33.9 bits (74), Expect = 0.096
Identities = 27/100 (27%), Positives = 37/100 (37%)
Frame = +2
Query: 92 GIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLL 271
G H + Q + + + H H+ H+H+ SH K E H + HSH
Sbjct: 553 GCTHSHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDSH---KHEEHHE---HDHHHHSHSH 606
Query: 272 KHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHH 391
KH E N H H H E+ HN +HH
Sbjct: 607 KH------EECNHNHDHEHQSHSHNH----EECNHNHDHH 636
Score = 30.7 bits (66), Expect = 0.89
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +2
Query: 101 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVY--VKKEHSHLLK 274
H+E Q + H+ HHH H+H + + + EH + H H
Sbjct: 579 HEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHDHHSD 638
Query: 275 HPLEKGKSEQNLKLIH 322
H EK + +++ + H
Sbjct: 639 HQPEKSEKKEHRHIDH 654
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 277 VLEKVAVLLLHVHRNGVEVFELDRLVRFGVFVFN 176
VLEK+ +LL + NG EL+ +VRF + FN
Sbjct: 1590 VLEKLVILLRCILENGFLTPELEDVVRFAIMTFN 1623
>At2g43120.1 68415.m05355 pirin, putative similar to SP|O00625 Pirin
{Homo sapiens}; contains Pfam profile PF02678: Pirin
Length = 321
Score = 30.7 bits (66), Expect = 0.89
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 53 IFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAK-SHQSIKFEHFH 229
I+ G + +TA GIIH E P+ E Q I S + IE + + SH I +
Sbjct: 116 IYAGDVQWMTAGRGIIHSEMPEEEVNKGLQLWINLSSNEKMIEPNYQELSHSDIPKAEQN 175
Query: 230 PVPVYVKKEHSHLLKHPL 283
V V V S ++ P+
Sbjct: 176 GVEVKVIAGESMGIQSPV 193
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 277 VLEKVAVLLLHVHRNGVEVFELDRLVRFGVFVFN 176
VLEK+ VLL + +G EL+ +VRF + FN
Sbjct: 1636 VLEKLVVLLGCILEDGFLTSELENVVRFVIMTFN 1669
>At2g36710.1 68415.m04504 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 407
Score = 24.6 bits (51), Expect(2) = 3.3
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2
Query: 164 HHHQIEHEHAKSHQSIK 214
HHH H H H+ IK
Sbjct: 56 HHHHHHHHHYHHHEPIK 72
Score = 22.6 bits (46), Expect(2) = 3.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Frame = +2
Query: 110 APQVEAKYDHQSLIGESGHHHQIEHEH 190
A + A + + G HHH H H
Sbjct: 35 ATTIGALAKYSTFFGHKHHHHHHHHHH 61
>At1g19790.1 68414.m02475 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 345
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 86 FPGIIHDEAPQVEAKYDHQSLIGESGHHHQI 178
F GI++D+ P + SL GE+ H H +
Sbjct: 261 FKGILYDQGPSSDHHRYSSSLNGETSHQHHL 291
>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
(CPK2) identical to calcium-dependent protein kinase
isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 646
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 190 RQISPVDQVRTLPPRSCVREEGAQPPSQAPS*KGKIRAKPQADSPRD*TQARRWTCPRGR 369
+++ P + + +PP RE QP S P + K +KP+ P ++ + T +
Sbjct: 99 QKVVPEESKQEVPPEESKREVVVQPESAKP--ETKSESKPETTKPETTSETKPETKAEPQ 156
Query: 370 QTQH 381
+ +H
Sbjct: 157 KPKH 160
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 131 YDHQSLIGESGHHHQIEHEHAKSH 202
++H + + HHH +HEH SH
Sbjct: 199 HNHSHGVTVTTHHHHHDHEHGHSH 222
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 131 YDHQSLIGESGHHHQIEHEHAKSH 202
++H + + HHH +HEH SH
Sbjct: 199 HNHSHGVTVTTHHHHHDHEHGHSH 222
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 161 GHHHQIEHEHAKSHQSIKFEHFHPVPVYV---KKEHSHLLKHPLE 286
G H + E +H HQ I + H ++ HS L+ HPL+
Sbjct: 172 GFHQEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHSPLILHPLD 216
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 161 GHHHQIEHEHAKSHQSIKFEHFHPVPVYV---KKEHSHLLKHPLE 286
G H + E +H HQ I + H ++ HS L+ HPL+
Sbjct: 172 GFHQEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHSPLILHPLD 216
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 161 GHHHQIEHEHAKSHQSIKFEHFHPVPVYV---KKEHSHLLKHPLE 286
G H + E +H HQ I + H ++ HS L+ HPL+
Sbjct: 172 GFHQEQEQDHHHHHQYISTNNDHDHHHHIDSNSNNHSPLILHPLD 216
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 47 YHIFLGLIAAVTAFPGIIHDEAPQVEAKYDH-----QSLIGESGHHHQIEHEHA 193
+++ ++++ A ++HD+A +V DH + ++G+ G +++E HA
Sbjct: 485 FNLLEDVLSSARAIQLVVHDDACKVVLMEDHMAREVREMVGDEGFWNEVEAVHA 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,026
Number of Sequences: 28952
Number of extensions: 261407
Number of successful extensions: 919
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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