Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0332
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    28   0.76 
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    27   1.8  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   3.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   4.1  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   4.1  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   5.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   5.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.4  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.4  

>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 204 YHLEQFLRALPMEHTVQNTEGTEVPPQTQ 118
           Y LEQ L+  P+EH +  TE  + PP+ +
Sbjct: 86  YGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 246 TPVAGGAMVKTRCWYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLHLVL 100
           TP  G  +  T CW  + ++L      + + +     VP +  R+H+ L
Sbjct: 96  TPGFGDFIDNTSCWNTVAEYLDEQHERYLIHDQNSLRVPRKDTRVHVCL 144


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 452 TSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG 312
           TS++P    S     NTL  P L  + S    +TV  + FH+  + G
Sbjct: 740 TSSVPTQHNSFDAMHNTLRSPSLNSNNSSAHASTVSRNPFHNLKISG 786


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 331 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 221
           I  +Y A  + G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 75  MSMGSSNHLTPGGASGSAEGLR 140
           +S  S+ H+TPG   GS E L+
Sbjct: 172 LSSSSNGHVTPGSKKGSRETLK 193


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 151 YRGNRSPSADPEAPPGVKWLLEPIDIYNVNAPPTS 47
           YRG  S ++ P APPG  +  +P   Y+   PP++
Sbjct: 446 YRGLSSGASIPSAPPGFGY-QQPSFPYSPGFPPSA 479


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 302 LWKRTVDDRSGSR*YG*TLLRWRAVRW 222
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 255  MNS-TPVAGGAMVKTRCWYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLHLVLSGYWSP 82
            MN+ TPV  G        +  EQ     PM+   Q   GTE+ P       ++S Y+ P
Sbjct: 1271 MNAQTPVNYGFAGGQDTSFGYEQQQMYSPMQQQQQQYYGTEMQPDMGYQQPMMSNYYDP 1329


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 227 APPATGVEFIHTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 382
           A P  G E   T   H  H   + +   C++ S     S  RCF  +++C S
Sbjct: 684 ADPVVGNED-RTQCDHVFHVNAIFKPSRCYICSESVWGSELRCFHCSISCHS 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,643
Number of Sequences: 5004
Number of extensions: 57424
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)