Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0332
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 2.4
10_01_0144 - 1705429-1706250 28 4.1
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 4.1
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753 28 5.4
01_06_1100 + 34530132-34530485,34530544-34530705 28 5.4
09_01_0060 - 942762-943448,943840-943867,944044-944077,944383-94... 27 7.2
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 27 7.2
10_02_0172 - 6162692-6163066 27 9.5
07_03_0228 + 15406193-15406356,15406437-15406584 27 9.5
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 27 9.5
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 27 9.5
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 27 9.5
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 27 9.5
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 206 GIISNNSSEHSPWNIRYKIQREPKSLRR 123
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>10_01_0144 - 1705429-1706250
Length = 273
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 258 WMNSTPVAGGAMVKTRCWYHLEQFLRALP 172
W+ +TP+A CWY L L +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = +2
Query: 278 GHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEAYGEY*AVGSGLA-----LPLA 442
G C SR L VPS +SS S C S NE + S L+ LPL
Sbjct: 1258 GQHFCTSRSLDSAVPSASMVSSAAS--RSNSLCRSGNEPMDAGTSRRSSLSTDAGGLPLD 1315
Query: 443 LLKSMGDGNHSPSGGPYARLPTKA 514
+L SM D N S RL + A
Sbjct: 1316 VLTSMADSNGQISAAVMERLTSAA 1339
>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
Length = 232
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 235 GRCDGKNEMLVSSRTIPQSTPHGTYGTKYRGNRSPSADP-EAPP 107
GRCDG+ + SR P+ + T G +P P APP
Sbjct: 50 GRCDGRRHRCLLSRGWPRRSSPSTVGLDAAQQSAPVHTPLHAPP 93
>01_06_1100 + 34530132-34530485,34530544-34530705
Length = 171
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 229 TARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVF 357
+A+H H L+ L+ T + + + + L+NEL ST+F
Sbjct: 105 SAKHLDTAHSVVLKELKKPTGQQEARDVTNQLELFNELKSTLF 147
>09_01_0060 -
942762-943448,943840-943867,944044-944077,944383-944437
Length = 267
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 301 SGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGT 164
+G+ALW T V G GGG G +L +S + P GT
Sbjct: 159 TGHALWSTNVTAGVNSSASGGGG---GAMAVLANSSNLVLRLPDGT 201
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 287 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 379
QCV++D + SPPRC PS+ +CP
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135
>10_02_0172 - 6162692-6163066
Length = 124
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Frame = +1
Query: 364 RYDMSFFKRGLWR---VLSGRQRLGSAPGIA---EVHGRR*PLTIRWAVCPSAYKG 513
R+D+ F +G WR + RL A A V RR L WA C S Y G
Sbjct: 9 RFDLVFEMKGRWRREGAAAMAMRLNEAVWHATGGSVWRRRQELAFLWADCESGYDG 64
>07_03_0228 + 15406193-15406356,15406437-15406584
Length = 103
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 314 GKKDLWKRTVDDRSGSR*YG*TLLRWRAV 228
G W+RTV R GS G T+ +W V
Sbjct: 24 GSTGRWRRTVAPREGSGTAGSTMTKWHRV 52
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 416 GSGLALPLALLKSMGDGNHSPSGGPYARL 502
GS LA L LL M PSG YARL
Sbjct: 64 GSDLASSLRLLADMQAAGLRPSGAAYARL 92
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 172 HGTYGTKYRGNRSPSADPEAPP 107
HGT+ T + + +ADP+APP
Sbjct: 708 HGTHATNKPFSTASNADPQAPP 729
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 334 NELPSTVFPERYDMSFFKRGLWRVLSG 414
N+ T + RY+M+F K G W++ G
Sbjct: 899 NDSYDTKYTTRYEMAFSKLGGWKITEG 925
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/53 (37%), Positives = 23/53 (43%)
Frame = +2
Query: 323 SGYGMSSPPRCFPSAMTCPSSNEAYGEY*AVGSGLALPLALLKSMGDGNHSPS 481
+G G SP + PS PS N GSG A P + S G GN PS
Sbjct: 79 NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,972,220
Number of Sequences: 37544
Number of extensions: 487219
Number of successful extensions: 1434
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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