Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0332
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 28 3.4
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 4.5
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 4.5
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 27 5.9
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ... 27 5.9
At3g61310.1 68416.m06861 DNA-binding family protein contains a A... 27 5.9
At3g08010.1 68416.m00978 expressed protein 27 7.9
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 27 7.9
At1g50910.1 68414.m05724 expressed protein 27 7.9
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 28.3 bits (60), Expect = 3.4
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -1
Query: 337 HSIAGWYVAK---KISGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHG 167
HSI WYV++ +I + W+ ++ D + G KN LVS +T+P T G
Sbjct: 593 HSIQSWYVSQSFWRIVATSSWLFSI----FDIILKLLGL--SKNVFLVSKKTMPVETMSG 646
Query: 166 T-YGTKYRGNRSPSADPEAPPGVKWLLEPIDIYNVN 62
+ G R + P++ G + L I VN
Sbjct: 647 SGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVN 682
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 281 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 382
HP S H PSG SSPP P +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 281 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPS 382
HP S H PSG SSPP P +T PS
Sbjct: 119 HPSTPSHPTPSHPPSGGYYSSPPPRTPVVVTPPS 152
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 151 ILYRMFHGECSEELFEMIPASRFYH 225
I +MFH EC E FE+I S +H
Sbjct: 108 ICEKMFHKECVESPFEIIHPSHPFH 132
>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
protein (TRH1) identical to tiny root hair 1 protein
[Arabidopsis thaliana] gi|11181958|emb|CAC16137;
KUP/HAK/KT Transporter family member, PMID:11500563;
identical to cDNA mRNA for tiny root hair 1 protein
(trh1) GI:11181957
Length = 775
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 119 WVCGGTSVPSVFCTVCSMGSALRNCSR*YQHLVFTIAPPATGVEFIHTTW 268
WV G +P + V + A+ C R +H+ F + F+ TTW
Sbjct: 374 WVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLAFV-TTW 422
>At3g61310.1 68416.m06861 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 354
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 171 MEHTVQNTEGTE--VPPQTQRLHLVLSGYWSP*TSTT*MRHPPRDI 40
+E+ NT T VP Q+Q + G WS + + M HP DI
Sbjct: 304 LENNNDNTAATSPPVPQQSQNIVQTPVGIWSTGSRSMDMHHPHMDI 349
>At3g08010.1 68416.m00978 expressed protein
Length = 374
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 457 HGLQQCQGQSQAAAYRLILSISLV*RRTCHSARETPWRGAHSIAGWYVAKKISG 296
+GL+ C ++ ++ LILS+ + R + ++TP + A W AKK SG
Sbjct: 292 NGLEVCSIEADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEA-WESAKKTSG 344
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 504 GRRAYGPPDGEWLP-SPMDFSNARGRA 427
G + Y P GEW+ SP+D GRA
Sbjct: 855 GTQVYNPERGEWMELSPLDVMQMIGRA 881
>At1g50910.1 68414.m05724 expressed protein
Length = 552
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 467 YRRPWTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHSRMVRG-KKD 303
+R + +P PS + NT+ +P LKK + + E F++ ++RG +KD
Sbjct: 495 FRATKVAFLPVKRPSSAITPNTIEQPPLKKQET-GEKDKKEEDGFYNLLIRGTQKD 549
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,040,050
Number of Sequences: 28952
Number of extensions: 338781
Number of successful extensions: 955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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