Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0331
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YAP7 Cluster: Lmo0070 protein; n=11; Listeria|Rep: Lm...    36   0.82 
UniRef50_Q73QQ8 Cluster: ABC transporter, ATP-binding/permease p...    35   1.9  
UniRef50_Q1V244 Cluster: Putative uncharacterized protein; n=7; ...    35   1.9  
UniRef50_A0DY25 Cluster: Chromosome undetermined scaffold_69, wh...    34   3.3  
UniRef50_Q23G83 Cluster: Hypothetical repeat containing protein;...    34   4.4  
UniRef50_Q7RM02 Cluster: Drosophila melanogaster GH13165p; n=4; ...    33   5.8  

>UniRef50_Q8YAP7 Cluster: Lmo0070 protein; n=11; Listeria|Rep:
           Lmo0070 protein - Listeria monocytogenes
          Length = 240

 Score = 36.3 bits (80), Expect = 0.82
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = -2

Query: 484 KFLFSNVNHGH*LQSELTQLNFILSRYMRTYLLISRILSSFYFFIRRRIQEGDYNTTTSI 305
           ++ +SN+ +G      LT    + S Y+   +L    L  FYF  R++++ GDY   + +
Sbjct: 103 RYFYSNLIYGIQNMVSLTAQTLVAS-YVFLLVLWILALIFFYFHFRKKLRNGDYRKDSEL 161

Query: 304 KKNISNQQNKIC--AVILIG 251
           +K  SN   K+   + ILIG
Sbjct: 162 QKKRSNLGLKLSKGSYILIG 181


>UniRef50_Q73QQ8 Cluster: ABC transporter, ATP-binding/permease
           protein; n=1; Treponema denticola|Rep: ABC transporter,
           ATP-binding/permease protein - Treponema denticola
          Length = 522

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 22/109 (20%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
 Frame = -2

Query: 523 FSLIYIERCTKYTKFLFSNVNHG-H*LQSELTQLNFILSRYMRTYLLISRILSSFYFFIR 347
           +S IY  +  +Y +  F  +N G + + ++  +        +R   ++++++++F+F I 
Sbjct: 200 YSYIYANKHNEYMQKEFGVLNKGFYSISAQAARAEQFGKNILRLITILTQVIAAFFFVIE 259

Query: 346 RRIQEGDYNTTTSIKKNISN----QQNKICAVILIGHTQTTTQNIYLFI 212
            +       +  +I+  I N      N + ++ILI   + + Q I+LF+
Sbjct: 260 NKSAAPSIGSFLAIQLMIGNIFAPVSNILNSIILISSKRASIQKIFLFL 308


>UniRef50_Q1V244 Cluster: Putative uncharacterized protein; n=7;
           Bacteria|Rep: Putative uncharacterized protein -
           Candidatus Pelagibacter ubique HTCC1002
          Length = 452

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -2

Query: 415 LSRYMRTYLLISRILSSFYFFIRRRIQEGDYNTTTSIKKNISNQQNKICAVILIGHTQTT 236
           LS+Y+  YLLIS +L  FY    ++ Q+ D+    S          ++  V+LI H    
Sbjct: 181 LSKYLFVYLLISIVLLFFYIIFVKKYQKFDFKYLISF---------EVFIVLLIPHLIWL 231

Query: 235 TQNIYLFITH 206
           T N Y+ IT+
Sbjct: 232 TNNDYITITY 241


>UniRef50_A0DY25 Cluster: Chromosome undetermined scaffold_69, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_69, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2823

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
 Frame = -2

Query: 658  LRNMYTYIFLMIMNFSNRINLKFFQ*LHFSWVGRF*YYYEKIVFFFSLIYIERCTKYTKF 479
            LR  +  I   +      + LK    L++ W+    + +  I F FS I++++ +  + F
Sbjct: 2412 LRERHFQIIFKLSQDHESVFLKML--LNYLWIYSVIFTFN-ISFSFSFIFVDQASNTSYF 2468

Query: 478  LFSNVNHGH*LQSELTQLNFILSRY------MRTYLLISRILSSFYFFIRRRIQEGDYNT 317
            + +N++      S++ +++ I SR       M    L+ +ILS  YF++ +   +  YN 
Sbjct: 2469 MANNLDC---YLSDIEEISLIYSRIITMLVLMLFQFLLIQILSLIYFYLSKSAPQQQYNY 2525

Query: 316  TT 311
             T
Sbjct: 2526 DT 2527


>UniRef50_Q23G83 Cluster: Hypothetical repeat containing protein;
           n=2; Alveolata|Rep: Hypothetical repeat containing
           protein - Tetrahymena thermophila SB210
          Length = 2930

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -2

Query: 472 SNVNHGH*LQSELTQLNFILSRYMRTYLLISRILSSFYFFIRRRIQEGDYNTTTSIKKNI 293
           S+ ++   +QS+ T  N + + Y++T+ +     SS Y     ++    YNTT       
Sbjct: 155 SSFSYSTWVQSQFTLFNNVKTIYIQTFQVNQSQFSSNYLM---QVLNS-YNTTIGFADLN 210

Query: 292 SNQQNKICAVILIGHTQTTTQNIYLFITHNRRKRIN-FVFNN*SFQTINIYSAI 134
            N QN I  V  +   +    NIY     N  + +N  +FN  S Q +++Y  I
Sbjct: 211 QNNQNYIADVQNVNIFKILKMNIYKCQIKNAGQPLNQNIFNFNSVQQLSLYEMI 264


>UniRef50_Q7RM02 Cluster: Drosophila melanogaster GH13165p; n=4;
           Plasmodium (Vinckeia)|Rep: Drosophila melanogaster
           GH13165p - Plasmodium yoelii yoelii
          Length = 446

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = -2

Query: 511 YIERCTKYTKFLFSNVNHGH*LQSELTQLNFILSRYMRTYL-LIS--RILSSFYFFIRRR 341
           YIE+  K  K L  N+NH   + +    +      Y+R  + +IS    +S   +FI + 
Sbjct: 189 YIEKTNKINKMLTGNINH---IITSFPNIQIKEKHYLRALISIISSYTCISPKNYFIFKT 245

Query: 340 IQEGDYNTTTSIKKNISNQQNKICAVI 260
            +  + N  T  ++N SN++N   +V+
Sbjct: 246 EENSEKNEQTDDEENESNKENTQSSVV 272


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,282,819
Number of Sequences: 1657284
Number of extensions: 12712126
Number of successful extensions: 33380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33309
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)