Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0331
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.9  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     27   3.8  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   5.0  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.7  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    25   8.8  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 393 IF*FRVYYLHFIFLYGDEYRKEIIIQRHLLRKIYRTNKTKYAQSFSLDIHRLQ 235
           I+ F   Y + + L+G    +E++  +H L +I   +     +SFSL    LQ
Sbjct: 229 IYSFADDYTYLLKLFGRLLAEELVSPKHFLLRIVSFSGDSSLKSFSLHFFALQ 281


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 1   PHVLEPTKHYVLY 39
           PH+ EPT H+VLY
Sbjct: 325 PHIREPTIHFVLY 337


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 20  LSTMYYMTIIYLTSFNI*ILSTAEVPTLKKSRTLAP 127
           L  +YY TI Y  ++ +  L +A  PT+ +  + AP
Sbjct: 372 LLPIYYQTIFYNGNYYLQQLPSASPPTMFRDHSFAP 407


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 390 F*FRVYYLHFIFLYGDEYRKEIIIQRHLLRKIYRT 286
           F F VYY    F Y    ++EII+  H    I  T
Sbjct: 8   FTFIVYYFIISFSYAFSIKQEIIVSSHNASSILNT 42


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 77  LSTAEVPTLKKSRTLAPSMYR-GVNINSLERLIIKDKINSFSPIMCNK 217
           + T   P   K   + PS  R  VN+N L R      +  F+P M  +
Sbjct: 9   IHTLRAPPKAKQNQIPPSTTRRAVNVNKLGRQFRYPSVGMFTPEMAKR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,301
Number of Sequences: 5004
Number of extensions: 61294
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)