Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0331
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)                  29   4.1  
SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)                    28   9.4  

>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = -1

Query: 398 NVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYIF 219
           N  +N  YT +I  + T  NT     YN  Y  +Y   T+ N   ++   YT+Y T+YI 
Sbjct: 127 NTEYNTEYTEYITEYITEYNTDYNTEYNTEYNTEY--NTEYNTEYNTE--YTEYITEYIT 182

Query: 218 IYYT 207
            Y T
Sbjct: 183 EYNT 186



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 398 NVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYIF 219
           N  +N  YT +   + T  NT     YN  Y  +Y E   + +  ++    T+YNT+Y  
Sbjct: 100 NTEYNNEYTEYNTDYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTEYNTEYNT 159

Query: 218 IYYT 207
            Y T
Sbjct: 160 EYNT 163


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 398 NVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYIF 219
           N  +N  YT +   + T  NT     YN  Y  +Y   T+ N   ++   YT+YNT+Y  
Sbjct: 281 NTEYNTEYTEYNTEYNTEYNTDYNTEYNTEYNTEY--NTEYNTEYNTE--YTEYNTEYNT 336

Query: 218 IYYT 207
            Y T
Sbjct: 337 EYNT 340



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 398 NVSFNFAY-TIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYI 222
           N  +N  Y T +I  + T  NT     YN  Y  +Y         +  +  YT+Y T+YI
Sbjct: 351 NTEYNTEYNTEYITEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYI 410

Query: 221 FIYYT 207
             Y T
Sbjct: 411 TEYNT 415



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
 Frame = -1

Query: 398 NVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEP------TKQNMRSHSHWT--YT 243
           N  +N  YT +I  + T  NT     YN  Y  +Y         T+ N   ++ +   YT
Sbjct: 395 NTEYNTEYTEYITEYITEYNTDYNTDYNTEYNTEYNTEYNTEYNTEYNTEYNNEYNNEYT 454

Query: 242 DYNTKYIFIYYT 207
           +YNT+Y   Y T
Sbjct: 455 EYNTEYNTEYNT 466



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -1

Query: 398 NVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYIF 219
           N  +N  Y       YT  NT     YN  Y  +Y E   + +  ++   YT+YNT+Y  
Sbjct: 438 NTEYNTEYNNEYNNEYTEYNTEYNTEYNTEYNTEYTEYITEYITEYNT-DYTEYNTEYNT 496

Query: 218 IYYT 207
            Y T
Sbjct: 497 EYNT 500



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -1

Query: 434 HTTKFYFKSVYE-NVSFNFAY-TIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSH 261
           + T++  + + E N  +N  Y T +   + T  NT     YN  Y  +Y E   + +  +
Sbjct: 354 YNTEYNTEYITEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEY 413

Query: 260 SHWTYTDYNTKYIFIYYT 207
           +    TDYNT+Y   Y T
Sbjct: 414 NTDYNTDYNTEYNTEYNT 431


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/64 (34%), Positives = 35/64 (54%)
 Frame = -2

Query: 448 LQSELTQLNFILSRYMRTYLLISRILSSFYFFIRRRIQEGDYNTTTSIKKNISNQQNKIC 269
           L++  TQ   +LS YM      +R L  FY  + RR +E      T++K+NI+N+  +IC
Sbjct: 32  LRTSATQYTTVLSDYM------ARTLKLFY--VIRRTKE--LLKKTAVKENITNELIEIC 81

Query: 268 AVIL 257
             I+
Sbjct: 82  TSII 85


>SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)
          Length = 266

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
 Frame = -1

Query: 434 HTTKFYFKSVYENVSFNFAYTIFILFFYTATNTGRRL*YNDIY*EKYIEP--TKQNMRSH 261
           + T++  K    N  +N  YT +   + T  NT     YN  Y  +Y     T+ N   +
Sbjct: 46  YNTEYNTKYTVYNTEYNTDYTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYN 105

Query: 260 SHWT------YTDYNTKYIFIYYT 207
           + +       YT+YNT+Y   Y T
Sbjct: 106 TEYNTDYNTEYTEYNTEYNTEYNT 129



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -1

Query: 398 NVSFNFAY-TIFILFFYTATNTGRRL*YNDIY*EKYIE-PTKQNMRSHSHWT--YTDYNT 231
           N  +N  Y T +   + T  NT     YN  Y E   E  T+ N   ++ +T  YT+YNT
Sbjct: 85  NTEYNTEYNTEYNTEYNTEYNTEYNTDYNTEYTEYNTEYNTEYNTEYNTEYTEYYTEYNT 144

Query: 230 KYIFIYYT 207
           +Y   Y T
Sbjct: 145 EYNTEYNT 152


>SB_1794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -1

Query: 398 NVSFNFAY-TIFILFFYTATNTGRRL*YNDIY*EKYIEPTKQNMRSHSHWTYTDYNTKYI 222
           N  +N  Y T +   + T  NT     YN  Y  +Y         +  +  YT+YNT+Y 
Sbjct: 82  NTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTEYN 141

Query: 221 FIYYT 207
             Y T
Sbjct: 142 TEYNT 146


>SB_43816| Best HMM Match : DUF755 (HMM E-Value=6.3)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/49 (22%), Positives = 29/49 (59%)
 Frame = -2

Query: 322 NTTTSIKKNISNQQNKICAVILIGHTQTTTQNIYLFITHNRRKRINFVF 176
           ++T +IKK+++ +  +  A++  G   T+    YLF   + +++ +F++
Sbjct: 222 DSTKAIKKSVTKRDTRDSALVAFGRWTTSFSWDYLFTLESCQQKWDFIY 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,732
Number of Sequences: 59808
Number of extensions: 385290
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)