Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0331
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92806-7|CAI79212.1|  290|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    28   6.2  

>Z92806-7|CAI79212.1|  290|Caenorhabditis elegans Hypothetical
           protein K10G4.10 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = -2

Query: 415 LSRYMRTYLLISRILSSFYFFIRRRIQEG-----DYNTTTSIKKNISNQQNKICAVI 260
           LS+Y++ +  ISR  +  +    R++        DY  +      IS +QNK+C  I
Sbjct: 113 LSKYLQQFQTISRQKTGIFLMNHRKVSRSLQDFVDYQGSGINSLEISYRQNKVCLTI 169


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -2

Query: 331 GDYNT---TTSIKKNISNQQNKICAVILIGHTQTTTQNIYLFITHNRRKRINFVFNN 170
           GDY T   + ++   ISN Q  + ++ LIG T+  T  + +F+T + RK+I F+  +
Sbjct: 379 GDYETLDISNNMSGRISNIQRALDSLTLIGITEVPT--VDMFLTPD-RKQIEFLLQH 432


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -2

Query: 331 GDYNT---TTSIKKNISNQQNKICAVILIGHTQTTTQNIYLFITHNRRKRINFVFNN 170
           GDY T   + ++   ISN Q  + ++ LIG T+  T  + +F+T + RK+I F+  +
Sbjct: 379 GDYETLDISNNMSGRISNIQRALDSLTLIGITEVPT--VDMFLTPD-RKQIEFLLQH 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,858
Number of Sequences: 27780
Number of extensions: 328204
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)