Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0330
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.0  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 335 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 219
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 13  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 335 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 219
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 335 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 219
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 496 PPDGEWLPSPMDFSNARG 443
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 189 HSPWNIRYKIQREPKSL 139
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 16/72 (22%), Positives = 29/72 (40%)
 Frame = -2

Query: 476  TVAHGLQQCQGQSQAAAYRLILSTSLV*RRTCHSARETPWRGAHSIAGWYVAKKISGNAL 297
            +V  G QQ   Q Q     +IL + L+  +T H  +  P        G  V  ++     
Sbjct: 1223 SVVLGKQQ-PSQQQTQQQPIILPSQLLNIKTLHGLKVIPTPAGLKTTGAAVYARVIAPTT 1281

Query: 296  WMTAVAPGSMDE 261
              ++ +PG+  +
Sbjct: 1282 ITSSQSPGNQQQ 1293


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 273 TWSHCGHPQCVSRDL 317
           TW+ CG P+ V+ ++
Sbjct: 522 TWTFCGTPEYVAPEV 536


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,615
Number of Sequences: 438
Number of extensions: 4240
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)