Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0327
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.0
07_03_0846 - 21983581-21986055 29 2.4
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 2.4
03_05_0183 - 21681673-21682524 29 3.1
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 4.1
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 7.2
07_03_0626 + 20060013-20060273,20061017-20061274 27 9.6
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 9.6
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171... 27 9.6
01_01_1235 - 10017728-10017766,10018891-10019352 27 9.6
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 458 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 592
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 600 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 451
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 371 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 469
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 159 SQAFIATLLFDPSMSALPIIAKQNSPS 239
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 98 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 205
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 311 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 475
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 476 GKDMLTVEPRESGGSK 523
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 7.2
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 449 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 622
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 623 TRASR 637
TRA+R
Sbjct: 64 TRAAR 68
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 470 RLGWLRP*RRSGIIP 426
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 477 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 581
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>01_07_0124 +
41212728-41212922,41215156-41215210,41215336-41217128,
41217363-41217521,41217883-41218054,41218173-41218471,
41219060-41219368
Length = 993
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -1
Query: 618 KKTESIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAF 439
KKT ++ + P+ R + + + +V S C D G+ ++ + R+ASA++AF
Sbjct: 566 KKTMAVVIASPSAGGRPRAFLKGASEVVLSRCSLVLDGTGNVEKLTDAKAKRVASAIDAF 625
>01_01_1235 - 10017728-10017766,10018891-10019352
Length = 166
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +2
Query: 392 GRAAGGAKLPSAGLCLNASKAEASLAESGKDM--LTVEPR---ESGGSKQCDFTSRVSHS 556
G GGA + + L+A+ L G + L + PR S + TS + S
Sbjct: 66 GEDGGGAGVRACSSDLSAAAFADELFREGALLRPLKLPPRLQTPSASAAASAATSPTAAS 125
Query: 557 KRETRRRSPFGSRRS 601
K + RSPF SRRS
Sbjct: 126 KAASSSRSPFASRRS 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,426
Number of Sequences: 37544
Number of extensions: 374223
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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