Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0326
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   7.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 347  PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQST 526
            PLP     P+P  S   P      T P+P       ++      PS +  ++P+      
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084

Query: 527  DPSPS 541
             P+PS
Sbjct: 1085 VPAPS 1089


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 365 LFYRVGDVLFDGVGNRNFLNDSY 297
           L  +VGD  F  VGN N LN +Y
Sbjct: 38  LIEKVGDETFRWVGNENELNGAY 60


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = +2

Query: 329 PRRKAHPLPGRKENPLPRESARS------PTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 490
           P  ++ P  GR+  PL    A S      P +P      LP      G +SRT+T P   
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP----LGNASRTSTPPVPT 419

Query: 491 EGALPSTCSQSTDPS 535
             +LP +   S  PS
Sbjct: 420 PPSLPPSAPPSLPPS 434


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 365 LFYRVGDVLFDGVGNRNFLNDSY 297
           L  +VGD  F  VGN N LN +Y
Sbjct: 37  LIEKVGDEKFRWVGNTNELNGAY 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,147
Number of Sequences: 5004
Number of extensions: 31332
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)