Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0326
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0737 - 13529180-13529543,13530661-13531178 34 0.12
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 0.62
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 31 0.82
05_03_0179 - 9257066-9258946 29 2.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 2.5
11_06_0610 - 25449085-25453284 29 3.3
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 3.3
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982... 29 4.4
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 29 4.4
10_08_0100 + 14788426-14789097 28 5.8
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 7.6
10_01_0336 + 3707065-3707174,3707183-3708185 28 7.6
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 7.6
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 347 PLPGRK---ENPLPRE-SARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 514
PL GR+ +P PR R P PR PS CQ A PSR ALPS
Sbjct: 70 PLQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQ----AAAPSRPPSALPSPT 125
Query: 515 SQSTDPSP 538
+ S+ SP
Sbjct: 126 ASSSTSSP 133
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.5 bits (68), Expect = 0.62
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +2
Query: 284 SPQNRNCR*ESSCSLPRRKAHPLPGRKE--NPLPRESARSPTLPRCQTCPLPS*RDCQGT 457
SPQ R+ R S S R K+ + R+ LPR +RSP R ++ R +
Sbjct: 469 SPQRRSARRSKSRSPLREKSVSMSPRRSMSKSLPRSVSRSPVARRSRSPVKARTRSISRS 528
Query: 458 SSRTATLPSRKEGALPSTCSQSTDPSP 538
S+R+ SR S +S SP
Sbjct: 529 SARSLQRRSRSRSLERSPVRKSVSRSP 555
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 31.1 bits (67), Expect = 0.82
Identities = 27/97 (27%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Frame = +2
Query: 281 GSPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 460
GS N + S S + P P P +A + P P PS R S
Sbjct: 136 GSSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTPSWRPSTPPS 195
Query: 461 SRTATLPSRKEGALPSTCSQSTDPSP-SRYMCQNLTP 568
++T T P R + PSP SR M TP
Sbjct: 196 AKTLTPPRRSPSPASTLTPPRRSPSPASRRMSTGSTP 232
>05_03_0179 - 9257066-9258946
Length = 626
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 350 LPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCSQSTD 529
L + P ++ A PT +C T P+PS C T S + P+ E P+T SQS
Sbjct: 138 LEAQHAQPCSKDGA-VPTPTKCST-PVPS---CAITKSDAESTPTTLEHVFPATMSQSMP 192
Query: 530 PSPS 541
+ S
Sbjct: 193 SAAS 196
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/73 (35%), Positives = 32/73 (43%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
PRR A P GR +P P S RSP PR P+ + SR+ P+ E S
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPMRA-------DSRS---PADHERRDMS 276
Query: 509 TCSQSTDPSPSRY 547
T + PSP Y
Sbjct: 277 TAANGRSPSPRDY 289
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/72 (23%), Positives = 27/72 (37%)
Frame = +2
Query: 329 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 508
P K+ P P + +P E + SP T P P + ++ P K + P
Sbjct: 801 PSEKSPPTPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPP 860
Query: 509 TCSQSTDPSPSR 544
S+ P P +
Sbjct: 861 EAHVSSPPPPEK 872
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +2
Query: 311 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 490
+SS P P +++P P E+ PTL + P P + + +++ PS++
Sbjct: 854 KSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTP-EISPPPEGKSPPSHTPESSSPPSKE 912
Query: 491 EGALPSTCSQSTDPSPSRYM 550
P+ +S+ PS Y+
Sbjct: 913 SEPPPTPTPKSSPPSHEEYV 932
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 323 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 448
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>03_02_0609 -
9823120-9823573,9823903-9824102,9824240-9824335,
9824454-9824567,9824711-9824774,9825206-9825312
Length = 344
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Frame = +2
Query: 293 NRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRT 469
+R R S PRR P G++ NP P RSP P+ + P P D + S
Sbjct: 213 DRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDNDERNGDSPW 271
Query: 470 ATLPSR--KEGALPSTCSQSTDPSP 538
SR +G + PSP
Sbjct: 272 GRENSRSPSDGYRSPVAANGRSPSP 296
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 287 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS-*RDCQGTSS 463
P N+N + + R + + G P P++ ARSP L R +P ++ + +S
Sbjct: 210 PSNKNMLVADAAA--RSSSLKVAGEGPKPKPKQRARSPPLRR----DVPELFKEAKSSSK 263
Query: 464 RTATLPSRKEGALPSTCSQS 523
R +T P R++ + P S+S
Sbjct: 264 RFSTPPPRRKPSSPPAPSRS 283
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 377 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 514
PR A SP PR C DCQ + R+A P+R + C
Sbjct: 178 PRRPAPSPASPRLPMCSYTCTVDCQTRNVRSA--PTRPSSSTDGGC 221
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = +2
Query: 311 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 490
+++ P A P P + P P +P+LP+ P +D T R T P+
Sbjct: 533 QAASRAPSPPAPPSPPQDPAPSPPHDPLAPSLPQAPAATPP--QDPALTPPRAPT-PTPP 589
Query: 491 EGALPSTCSQSTDPSP 538
+ LP+ P+P
Sbjct: 590 QAPLPAPSKSRAPPTP 605
>10_01_0336 + 3707065-3707174,3707183-3708185
Length = 370
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 564 VRFWHIYLDGDGSVDWEHVLGKAPSFRLGRVAV 466
+ FW + DG+VDW H S L V +
Sbjct: 287 ISFWETEVSADGAVDWVHTQNALVSIPLPGVLI 319
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 347 PLPGRKENPLPRESARSPTLPRCQTCPLP 433
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,608,142
Number of Sequences: 37544
Number of extensions: 256785
Number of successful extensions: 953
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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